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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABCF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABCF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.5
171
Tumor
1.3
567
Tumor
1.2
965
Tumor
1.1
497
Tumor
1.1
283
Tumor
1.1
537
Tumor
1.0
211
Tumor
1.0
257
Tumor
1.0
285
Tumor
1.0
375
Tumor
0.9
387
Tumor
0.9
661
Tumor
0.9
785
Tumor
0.8
665
Tumor
0.8
147
Tumor
0.8
493
Tumor
0.8
473
Tumor
0.8
1013
Tumor
0.8
137
Tumor
0.8
483
Tumor
0.8
743
Tumor
0.7
851
Tumor
0.7
351
Tumor
0.7
745
Tumor
0.7
724
Normal
0.7
943
Tumor
0.6
983
Tumor
0.6
533
Tumor
0.6
953
Tumor
0.6
213
Tumor
0.6
231
Tumor
0.6
525
Tumor
0.6
187
Tumor
0.6
1021
Tumor
0.5
865
Tumor
0.5
635
Tumor
0.5
425
Tumor
0.5
977
Tumor
0.5
755
Tumor
0.5
685
Tumor
0.5
557
Tumor
0.5
815
Tumor
0.5
527
Tumor
0.5
513
Tumor
0.5
395
Tumor
0.5
535
Tumor
0.4
937
Tumor
0.4
727
Tumor
0.4
861
Tumor
0.4
131
Tumor
0.4
223
Tumor
0.4
697
Tumor
0.4
261
Tumor
0.4
123
Tumor
0.4
411
Tumor
0.4
297
Tumor
0.4
975
Tumor
0.4
327
Tumor
0.4
913
Tumor
0.4
647
Tumor
0.4
957
Tumor
0.4
311
Tumor
0.4
671
Tumor
0.4
915
Tumor
0.4
427
Tumor
0.4
923
Tumor
0.3
917
Tumor
0.3
445
Tumor
0.3
777
Tumor
0.3
365
Tumor
0.3
125
Tumor
0.3
1015
Tumor
0.3
737
Tumor
0.3
573
Tumor
0.3
545
Tumor
0.3
951
Tumor
0.3
523
Tumor
0.3
881
Tumor
0.3
925
Tumor
0.3
227
Tumor
0.3
393
Tumor
0.3
391
Tumor
0.3
313
Tumor
0.3
267
Tumor
0.3
883
Tumor
0.3
963
Tumor
0.2
113
Tumor
0.2
195
Tumor
0.2
385
Tumor
0.2
1025
Tumor
0.2
1041
Tumor
0.2
185
Tumor
0.2
911
Tumor
0.2
353
Tumor
0.2
221
Tumor
0.2
277
Tumor
0.1
435
Tumor
0.1
715
Tumor
0.1
471
Tumor
0.1
217
Tumor
0.1
135
Tumor
0.1
515
Tumor
0.1
361
Tumor
0.1
461
Tumor
0.1
663
Tumor
0.1
481
Tumor
0.1
191
Tumor
0.1
433
Tumor
0.1
615
Tumor
0.1
536
Normal
0.1
455
Tumor
0.1
981
Tumor
0.1
355
Tumor
0.1
873
Tumor
0.1
553
Tumor
0.1
451
Tumor
0.1
331
Tumor
0.1
517
Tumor
0.1
443
Tumor
0.0
161
Tumor
0.0
467
Tumor
0.0
967
Tumor
0.0
477
Tumor
0.0
367
Tumor
0.0
357
Tumor
0.0
421
Tumor
0.0
863
Tumor
0.0
721
Tumor
0.0
1043
Tumor
0.0
141
Tumor
0.0
741
Tumor
0.0
491
Tumor
0.0
867
Tumor
-0.1
413
Tumor
-0.1
857
Tumor
-0.1
447
Tumor
-0.1
145
Tumor
-0.1
463
Tumor
-0.1
617
Tumor
-0.1
823
Tumor
-0.1
383
Tumor
-0.1
1031
Tumor
-0.1
955
Tumor
-0.1
641
Tumor
-0.1
713
Tumor
-0.1
341
Tumor
-0.1
813
Tumor
-0.1
921
Tumor
-0.1
571
Tumor
-0.1
627
Tumor
-0.1
1045
Tumor
-0.1
554
Normal
-0.1
558
Normal
-0.1
487
Tumor
-0.1
978
Normal
-0.1
563
Tumor
-0.1
271
Tumor
-0.1
423
Tumor
-0.2
127
Tumor
-0.2
431
Tumor
-0.2
564
Normal
-0.2
434
Normal
-0.2
492
Normal
-0.2
966
Normal
-0.2
498
Normal
-0.2
722
Normal
-0.2
852
Normal
-0.2
877
Tumor
-0.2
568
Normal
-0.2
538
Normal
-0.2
126
Normal
-0.2
817
Tumor
-0.2
534
Normal
-0.2
956
Normal
-0.2
1028
Normal
-0.2
916
Normal
-0.2
284
Normal
-0.2
524
Normal
-0.2
444
Normal
-0.2
114
Normal
-0.2
574
Normal
-0.2
572
Normal
-0.2
968
Normal
-0.3
268
Normal
-0.3
224
Normal
-0.3
976
Normal
-0.3
528
Normal
-0.3
188
Normal
-0.3
192
Normal
-0.3
884
Normal
-0.3
666
Normal
-0.3
954
Normal
-0.3
958
Normal
-0.3
262
Normal
-0.3
546
Normal
-0.3
415
Tumor
-0.3
866
Normal
-0.3
938
Normal
-0.3
218
Normal
-0.3
1032
Normal
-0.3
474
Normal
-0.3
786
Normal
-0.3
478
Normal
-0.3
1026
Normal
-0.3
386
Normal
-0.3
286
Normal
-0.3
465
Tumor
-0.3
814
Normal
-0.3
1042
Normal
-0.3
964
Normal
-0.3
396
Normal
-0.3
124
Normal
-0.3
392
Normal
-0.3
363
Tumor
-0.3
952
Normal
-0.3
862
Normal
-0.3
818
Normal
-0.3
362
Normal
-0.3
278
Normal
-0.3
944
Normal
-0.3
628
Normal
-0.3
446
Normal
-0.3
228
Normal
-0.3
272
Normal
-0.3
222
Normal
-0.3
214
Normal
-0.3
142
Normal
-0.4
232
Normal
-0.4
212
Normal
-0.4
136
Normal
-0.4
918
Normal
-0.4
868
Normal
-0.4
982
Normal
-0.4
138
Normal
-0.4
258
Normal
-0.4
728
Normal
-0.4
864
Normal
-0.4
482
Normal
-0.4
616
Normal
-0.4
432
Normal
-0.4
111
Normal
-0.4
472
Normal
-0.4
494
Normal
-0.4
394
Normal
-0.4
384
Normal
-0.4
746
Normal
-0.4
778
Normal
-0.4
388
Normal
-0.4
368
Normal
-0.4
858
Normal
-0.4
1016
Normal
-0.4
642
Normal
-0.4
484
Normal
-0.4
146
Normal
-0.4
984
Normal
-0.4
332
Normal
-0.4
672
Normal
-0.4
636
Normal
-0.4
926
Normal
-0.4
882
Normal
-0.4
196
Normal
-0.4
518
Normal
-0.4
874
Normal
-0.4
738
Normal
-0.4
662
Normal
-0.4
1022
Normal
-0.4
312
Normal
-0.4
816
Normal
-0.4
714
Normal
-0.4
488
Normal
-0.4
416
Normal
-0.4
824
Normal
-0.4
912
Normal
-0.4
664
Normal
-0.4
723
Tumor
-0.4
742
Normal
-0.4
436
Normal
-0.4
1044
Normal
-0.4
648
Normal
-0.4
132
Normal
-0.4
514
Normal
-0.4
1014
Normal
-0.4
466
Normal
-0.4
516
Normal
-0.4
924
Normal
-0.4
356
Normal
-0.4
412
Normal
-0.5
298
Normal
-0.5
756
Normal
-0.5
328
Normal
-0.5
526
Normal
-0.5
744
Normal
-0.5
344
Normal
-0.5
343
Tumor
-0.5
366
Normal
-0.5
352
Normal
-0.5
112
Tumor
-0.5
376
Normal
-0.5
422
Normal
-0.5
922
Normal
-0.5
172
Normal
-0.5
314
Normal
-0.5
1046
Normal
-0.5
696
Normal
-0.5
364
Normal
-0.5
686
Normal
-0.5
186
Normal
-0.5
452
Normal
-0.5
878
Normal
-0.5
128
Normal
-0.5
456
Normal
-0.5
424
Normal
-0.5
148
Normal
-0.5
468
Normal
-0.5
464
Normal
-0.5
462
Normal
-0.5
358
Normal
-0.5
618
Normal
-0.5
162
Normal
-0.5
448
Normal
-0.5
914
Normal
-0.5
414
Normal
-0.6
354
Normal
-0.6
426
Normal
-0.6
428
Normal
-0.6
342
Normal
-0.6
716
Normal
-0.6
698
Normal
-0.7
695
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.