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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RANBP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
61.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RANBP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.2
815
Tumor
0.9
1031
Tumor
0.8
983
Tumor
0.8
131
Tumor
0.8
431
Tumor
0.7
737
Tumor
0.7
487
Tumor
0.7
331
Tumor
0.7
881
Tumor
0.7
211
Tumor
0.6
785
Tumor
0.6
715
Tumor
0.6
545
Tumor
0.6
965
Tumor
0.5
665
Tumor
0.5
743
Tumor
0.5
777
Tumor
0.5
865
Tumor
0.5
697
Tumor
0.5
363
Tumor
0.5
1025
Tumor
0.5
967
Tumor
0.5
473
Tumor
0.5
923
Tumor
0.5
963
Tumor
0.4
463
Tumor
0.4
917
Tumor
0.4
523
Tumor
0.4
445
Tumor
0.4
311
Tumor
0.4
977
Tumor
0.4
913
Tumor
0.4
355
Tumor
0.4
953
Tumor
0.4
447
Tumor
0.4
1013
Tumor
0.4
724
Normal
0.4
353
Tumor
0.4
367
Tumor
0.4
513
Tumor
0.3
1015
Tumor
0.3
277
Tumor
0.3
375
Tumor
0.3
461
Tumor
0.3
413
Tumor
0.3
943
Tumor
0.3
383
Tumor
0.3
478
Normal
0.3
727
Tumor
0.3
921
Tumor
0.3
223
Tumor
0.3
411
Tumor
0.3
755
Tumor
0.3
937
Tumor
0.3
877
Tumor
0.3
271
Tumor
0.3
467
Tumor
0.3
536
Normal
0.3
981
Tumor
0.3
955
Tumor
0.3
415
Tumor
0.3
351
Tumor
0.3
517
Tumor
0.2
137
Tumor
0.2
966
Normal
0.2
527
Tumor
0.2
444
Normal
0.2
554
Normal
0.2
553
Tumor
0.2
327
Tumor
0.2
685
Tumor
0.2
911
Tumor
0.2
538
Normal
0.2
975
Tumor
0.2
498
Normal
0.2
1041
Tumor
0.2
641
Tumor
0.2
365
Tumor
0.2
878
Normal
0.2
471
Tumor
0.2
1043
Tumor
0.2
518
Normal
0.2
984
Normal
0.2
123
Tumor
0.2
824
Normal
0.2
1045
Tumor
0.2
858
Normal
0.2
297
Tumor
0.2
481
Tumor
0.2
857
Tumor
0.2
515
Tumor
0.2
628
Normal
0.2
861
Tumor
0.2
696
Normal
0.2
472
Normal
0.1
978
Normal
0.1
524
Normal
0.1
954
Normal
0.1
818
Normal
0.1
823
Tumor
0.1
615
Tumor
0.1
535
Tumor
0.1
695
Tumor
0.1
483
Tumor
0.1
298
Normal
0.1
915
Tumor
0.1
866
Normal
0.1
721
Tumor
0.1
938
Normal
0.1
497
Tumor
0.1
492
Normal
0.1
1014
Normal
0.1
465
Tumor
0.1
863
Tumor
0.1
716
Normal
0.1
924
Normal
0.1
883
Tumor
0.1
714
Normal
0.1
395
Tumor
0.1
852
Normal
0.1
141
Tumor
0.1
968
Normal
0.1
423
Tumor
0.1
1032
Normal
0.1
1028
Normal
0.1
488
Normal
0.1
514
Normal
0.1
851
Tumor
0.1
455
Tumor
0.1
516
Normal
0.1
982
Normal
0.1
546
Normal
0.1
142
Normal
0.1
882
Normal
0.1
1046
Normal
0.1
212
Normal
0.1
958
Normal
0.1
636
Normal
0.1
534
Normal
0.1
1016
Normal
0.1
192
Normal
0.1
482
Normal
0.1
864
Normal
0.1
616
Normal
0.1
951
Tumor
0.1
663
Tumor
0.1
976
Normal
0.1
952
Normal
0.1
313
Tumor
0.1
686
Normal
0.1
744
Normal
0.1
728
Normal
0.1
227
Tumor
0.1
944
Normal
0.1
427
Tumor
0.1
916
Normal
0.1
412
Normal
0.1
874
Normal
0.1
867
Tumor
0.1
261
Tumor
0.1
922
Normal
0.0
873
Tumor
0.0
1022
Normal
0.0
918
Normal
0.0
1026
Normal
0.0
957
Tumor
0.0
926
Normal
0.0
332
Normal
0.0
884
Normal
0.0
352
Normal
0.0
814
Normal
0.0
443
Tumor
0.0
1044
Normal
0.0
738
Normal
0.0
1021
Tumor
0.0
664
Normal
0.0
526
Normal
0.0
868
Normal
0.0
912
Normal
0.0
746
Normal
0.0
267
Tumor
0.0
572
Normal
0.0
286
Normal
0.0
491
Tumor
0.0
813
Tumor
0.0
964
Normal
0.0
816
Normal
0.0
635
Tumor
0.0
722
Normal
0.0
627
Tumor
0.0
698
Normal
0.0
557
Tumor
0.0
817
Tumor
0.0
484
Normal
0.0
617
Tumor
0.0
466
Normal
0.0
364
Normal
0.0
354
Normal
0.0
778
Normal
0.0
448
Normal
0.0
647
Tumor
0.0
925
Tumor
0.0
723
Tumor
0.0
393
Tumor
0.0
1042
Normal
0.0
742
Normal
0.0
284
Normal
0.0
224
Normal
0.0
642
Normal
0.0
433
Tumor
0.0
862
Normal
0.0
446
Normal
0.0
416
Normal
0.0
196
Normal
0.0
528
Normal
0.0
125
Tumor
0.0
456
Normal
0.0
468
Normal
0.0
146
Normal
0.0
474
Normal
0.0
672
Normal
0.0
494
Normal
0.0
425
Tumor
0.0
357
Tumor
0.0
661
Tumor
-0.1
278
Normal
-0.1
914
Normal
-0.1
344
Normal
-0.1
362
Normal
-0.1
574
Normal
-0.1
113
Tumor
-0.1
756
Normal
-0.1
187
Tumor
-0.1
356
Normal
-0.1
618
Normal
-0.1
366
Normal
-0.1
462
Normal
-0.1
283
Tumor
-0.1
564
Normal
-0.1
368
Normal
-0.1
452
Normal
-0.1
786
Normal
-0.1
451
Tumor
-0.1
537
Tumor
-0.1
493
Tumor
-0.1
228
Normal
-0.1
567
Tumor
-0.1
424
Normal
-0.1
328
Normal
-0.1
422
Normal
-0.1
268
Normal
-0.1
956
Normal
-0.1
558
Normal
-0.1
221
Tumor
-0.1
358
Normal
-0.1
161
Tumor
-0.1
426
Normal
-0.1
214
Normal
-0.1
191
Tumor
-0.1
434
Normal
-0.1
414
Normal
-0.1
195
Tumor
-0.1
662
Normal
-0.1
376
Normal
-0.1
312
Normal
-0.1
648
Normal
-0.1
741
Tumor
-0.1
135
Tumor
-0.1
464
Normal
-0.1
114
Normal
-0.1
568
Normal
-0.2
436
Normal
-0.2
384
Normal
-0.2
392
Normal
-0.2
124
Normal
-0.2
314
Normal
-0.2
342
Normal
-0.2
533
Tumor
-0.2
126
Normal
-0.2
361
Tumor
-0.2
666
Normal
-0.2
386
Normal
-0.2
138
Normal
-0.2
435
Tumor
-0.2
222
Normal
-0.2
111
Normal
-0.2
396
Normal
-0.2
432
Normal
-0.2
713
Tumor
-0.2
128
Normal
-0.2
563
Tumor
-0.2
385
Tumor
-0.2
571
Tumor
-0.2
341
Tumor
-0.2
218
Normal
-0.2
148
Normal
-0.2
136
Normal
-0.2
525
Tumor
-0.2
232
Normal
-0.2
217
Tumor
-0.3
428
Normal
-0.3
272
Normal
-0.3
262
Normal
-0.3
258
Normal
-0.3
388
Normal
-0.3
132
Normal
-0.3
394
Normal
-0.3
145
Tumor
-0.3
387
Tumor
-0.3
112
Tumor
-0.3
188
Normal
-0.3
477
Tumor
-0.3
147
Tumor
-0.3
671
Tumor
-0.3
421
Tumor
-0.4
127
Tumor
-0.4
573
Tumor
-0.4
343
Tumor
-0.4
1027
Tumor
-0.4
745
Tumor
-0.4
171
Tumor
-0.4
391
Tumor
-0.4
213
Tumor
-0.5
231
Tumor
-0.5
186
Normal
-0.5
185
Tumor
-0.6
257
Tumor
-0.6
162
Normal
-0.6
172
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
