MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.5 nTPM
HPA Brain:54.3 nTPM
GTEx:29.5 nTPM
FANTOM5:45.4 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:38.1 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.6
2586 Male, age 75, left hemisphere 58.2
1833 Male, age 53, unknown 47.2
1827 Male, age 72, unknown 46.8
2828 Female, age 72, unknown 45.9
1870 Female, age 42, unknown 45.5
2411 Female, age 72, unknown 44.6
2666 Male, age 74, left hemisphere 41.6
1830 Male, age 51, unknown 40.2
2219 Male, age 76, both hemispheres 39.0
2019 Male, age 18, unknown 37.5
Dorsal raphe nucleus
nTPM: 40.1
1828 Male, age 53, unknown 42.8
2047 Male, age 72, unknown 42.7
2750 Male, age 76, both hemispheres 41.6
2298 Female, age 72, unknown 39.6
2016 Female, age 72, unknown 33.9
Inferior colliculus
nTPM: 41.7
2849 Male, age 72, unknown 47.2
1848 Female, age 42, unknown 41.8
2097 Female, age 72, unknown 41.4
1890 Male, age 53, unknown 36.3
Median raphe nucleus
nTPM: 42.6
2220 Male, age 76, midline 42.6
Periaquaductal grey, anterior
nTPM: 54.3
1947 Male, age 18, unknown 58.7
2502 Female, age 75, unknown 57.6
1795 Male, age 51, unknown 46.7
Periaquaductal grey, dorsal
nTPM: 39.7
1840 Male, age 53, unknown 41.0
2464 Female, age 72, unknown 40.9
2850 Male, age 76, both hemispheres 38.5
1831 Male, age 72, unknown 38.4
Periaquaductal grey, lateral
nTPM: 39.8
2272 Male, age 74, both hemispheres 40.6
2053 Male, age 18, unknown 40.4
2140 Male, age 76, both hemispheres 38.4
Pretectal area
nTPM: 43.8
2007 Male, age 72, unknown 47.8
2407 Male, age 75, both hemispheres 47.6
1816 Male, age 51, unknown 47.1
1944 Female, age 72, unknown 46.9
1817 Female, age 42, unknown 45.3
2825 Male, age 18, unknown 45.1
2316 Male, age 76, right hemisphere 42.6
2667 Female, age 75, unknown 42.6
2224 Female, age 72, unknown 40.2
2273 Male, age 74, both hemispheres 38.2
1815 Male, age 53, unknown 37.9
Red nucleus
nTPM: 43.0
2584 Male, age 75, left hemisphere 48.4
1865 Male, age 51, unknown 46.7
1954 Female, age 42, unknown 46.0
2503 Female, age 72, unknown 45.5
2227 Male, age 72, unknown 44.6
2588 Male, age 74, left hemisphere 44.3
1904 Male, age 53, unknown 43.2
1821 Female, age 72, unknown 41.1
2769 Male, age 72, unknown 41.0
2785 Male, age 18, unknown 41.0
2725 Female, age 75, unknown 40.8
2823 Male, age 76, right hemisphere 33.7
Substantia nigra
nTPM: 45.3
1916 Female, age 42, unknown 52.8
1851 Male, age 51, unknown 49.2
1941 Male, age 53, unknown 47.3
2699 Male, age 18, unknown 46.8
2583 Male, age 75, right hemisphere 44.7
2409 Female, age 72, unknown 44.0
2665 Male, age 74, both hemispheres 44.0
1889 Female, age 72, unknown 43.8
2590 Female, age 75, unknown 41.5
2241 Male, age 72, unknown 38.6
Superior colliculus
nTPM: 43.6
2664 Male, age 75, both hemispheres 50.9
2668 Female, age 75, unknown 47.6
1796 Male, age 53, unknown 47.4
2261 Male, age 18, unknown 45.1
1839 Male, age 51, unknown 44.5
2087 Female, age 72, unknown 43.7
1913 Female, age 42, unknown 41.2
2587 Male, age 74, left hemisphere 40.9
1995 Male, age 72, unknown 37.4
1895 Male, age 76, right hemisphere 37.0
Ventral tegmental area
nTPM: 43.8
2218 Male, age 76, both hemispheres 49.5
1915 Female, age 42, unknown 44.8
2410 Female, age 72, unknown 43.1
1942 Male, age 51, unknown 42.3
2021 Male, age 53, unknown 42.2
2223 Female, age 72, unknown 40.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.5
Samples: 139

Max nTPM: 38.5
Min nTPM: 20.1
Std nTPM: 3.5
Median nTPM: 29.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 37.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 37.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 36.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 36.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 35.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 35.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.4
FF:10158-103A5 76 years, female 45.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.6
Samples: 4

Max nTPM: 39.8
Min nTPM: 33.2
Sample A Female 38.2
Sample B Female 33.2
Sample C Male 39.8
Sample D Male 35.1
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 42.3
Min nTPM: 34.1
Sample A Female 42.3
Sample B Female 34.1
Sample C Male 36.2
Sample D Male 36.3
Periaqueductal gray
nTPM: 35.0
Samples: 3

Max nTPM: 37.7
Min nTPM: 33.1
Sample B Female 34.3
Sample C Male 37.7
Sample D Male 33.1
Superior colliculi
nTPM: 37.4
Samples: 4

Max nTPM: 40.4
Min nTPM: 34.9
Sample A Female 40.4
Sample B Female 35.9
Sample C Male 34.9
Sample D Male 38.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 39.3
Min nTPM: 36.3
Sample A Male 39.3
Sample B Male 36.3
Sample C Female 37.7
Sample D Female 39.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71493044 Antisense, RP_050913_02_A09, Mouse strain C57BL/6J (56 days, male) 0.5

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