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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BAK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
57.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
55.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BAK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
75.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
57.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.4
367
Tumor
1.3
1027
Tumor
1.2
257
Tumor
1.1
517
Tumor
1.1
227
Tumor
1.1
125
Tumor
1.1
823
Tumor
1.0
343
Tumor
0.9
743
Tumor
0.9
573
Tumor
0.9
571
Tumor
0.9
271
Tumor
0.8
641
Tumor
0.8
355
Tumor
0.8
695
Tumor
0.8
745
Tumor
0.8
1025
Tumor
0.8
493
Tumor
0.7
161
Tumor
0.7
877
Tumor
0.7
523
Tumor
0.7
923
Tumor
0.6
262
Normal
0.6
385
Tumor
0.6
491
Tumor
0.6
434
Normal
0.6
411
Tumor
0.6
135
Tumor
0.6
391
Tumor
0.5
217
Tumor
0.5
661
Tumor
0.5
513
Tumor
0.5
231
Tumor
0.5
967
Tumor
0.5
267
Tumor
0.5
311
Tumor
0.5
553
Tumor
0.5
313
Tumor
0.5
671
Tumor
0.5
113
Tumor
0.4
663
Tumor
0.4
124
Normal
0.4
331
Tumor
0.4
351
Tumor
0.4
393
Tumor
0.4
451
Tumor
0.4
272
Normal
0.4
815
Tumor
0.4
141
Tumor
0.4
363
Tumor
0.4
126
Normal
0.4
443
Tumor
0.4
383
Tumor
0.3
421
Tumor
0.3
627
Tumor
0.3
435
Tumor
0.3
545
Tumor
0.3
467
Tumor
0.3
497
Tumor
0.3
685
Tumor
0.3
881
Tumor
0.3
713
Tumor
0.3
361
Tumor
0.3
724
Normal
0.3
213
Tumor
0.3
145
Tumor
0.3
188
Normal
0.3
914
Normal
0.3
461
Tumor
0.3
433
Tumor
0.2
813
Tumor
0.2
297
Tumor
0.2
218
Normal
0.2
514
Normal
0.2
114
Normal
0.2
413
Tumor
0.2
127
Tumor
0.2
162
Normal
0.2
283
Tumor
0.2
463
Tumor
0.2
221
Tumor
0.2
487
Tumor
0.2
111
Normal
0.2
883
Tumor
0.2
142
Normal
0.2
172
Normal
0.2
473
Tumor
0.2
186
Normal
0.2
138
Normal
0.2
342
Normal
0.2
364
Normal
0.2
137
Tumor
0.2
211
Tumor
0.2
387
Tumor
0.1
375
Tumor
0.1
222
Normal
0.1
362
Normal
0.1
214
Normal
0.1
741
Tumor
0.1
358
Normal
0.1
917
Tumor
0.1
258
Normal
0.1
524
Normal
0.1
721
Tumor
0.1
285
Tumor
0.1
123
Tumor
0.1
525
Tumor
0.1
662
Normal
0.1
412
Normal
0.1
921
Tumor
0.1
332
Normal
0.1
665
Tumor
0.1
423
Tumor
0.1
365
Tumor
0.1
232
Normal
0.1
814
Normal
0.1
414
Normal
0.1
617
Tumor
0.1
146
Normal
0.1
223
Tumor
0.1
268
Normal
0.1
518
Normal
0.1
368
Normal
0.1
452
Normal
0.1
563
Tumor
0.0
635
Tumor
0.0
195
Tumor
0.0
136
Normal
0.0
148
Normal
0.0
356
Normal
0.0
196
Normal
0.0
386
Normal
0.0
132
Normal
0.0
192
Normal
0.0
465
Tumor
0.0
366
Normal
0.0
185
Tumor
0.0
666
Normal
0.0
436
Normal
0.0
978
Normal
0.0
574
Normal
0.0
852
Normal
0.0
882
Normal
0.0
515
Tumor
0.0
686
Normal
0.0
567
Tumor
0.0
1043
Tumor
0.0
966
Normal
0.0
376
Normal
-0.1
738
Normal
-0.1
976
Normal
-0.1
777
Tumor
-0.1
427
Tumor
-0.1
392
Normal
-0.1
824
Normal
-0.1
422
Normal
-0.1
128
Normal
-0.1
131
Tumor
-0.1
873
Tumor
-0.1
344
Normal
-0.1
462
Normal
-0.1
286
Normal
-0.1
396
Normal
-0.1
727
Tumor
-0.1
557
Tumor
-0.1
742
Normal
-0.1
424
Normal
-0.1
477
Tumor
-0.1
224
Normal
-0.1
388
Normal
-0.1
187
Tumor
-0.1
737
Tumor
-0.1
723
Tumor
-0.1
432
Normal
-0.1
958
Normal
-0.1
755
Tumor
-0.1
858
Normal
-0.1
357
Tumor
-0.1
925
Tumor
-0.1
818
Normal
-0.2
228
Normal
-0.2
715
Tumor
-0.2
416
Normal
-0.2
1015
Tumor
-0.2
394
Normal
-0.2
471
Tumor
-0.2
728
Normal
-0.2
564
Normal
-0.2
786
Normal
-0.2
533
Tumor
-0.2
464
Normal
-0.2
817
Tumor
-0.2
191
Tumor
-0.2
861
Tumor
-0.2
415
Tumor
-0.2
572
Normal
-0.2
722
Normal
-0.2
395
Tumor
-0.2
261
Tumor
-0.2
642
Normal
-0.2
546
Normal
-0.2
1016
Normal
-0.2
1044
Normal
-0.2
672
Normal
-0.2
447
Tumor
-0.2
277
Tumor
-0.2
468
Normal
-0.2
445
Tumor
-0.2
498
Normal
-0.2
943
Tumor
-0.2
778
Normal
-0.2
492
Normal
-0.2
664
Normal
-0.2
384
Normal
-0.2
284
Normal
-0.2
456
Normal
-0.2
744
Normal
-0.2
957
Tumor
-0.2
494
Normal
-0.3
618
Normal
-0.3
483
Tumor
-0.3
1031
Tumor
-0.3
444
Normal
-0.3
455
Tumor
-0.3
446
Normal
-0.3
951
Tumor
-0.3
697
Tumor
-0.3
426
Normal
-0.3
353
Tumor
-0.3
328
Normal
-0.3
112
Tumor
-0.3
341
Tumor
-0.3
314
Normal
-0.3
756
Normal
-0.3
352
Normal
-0.3
863
Tumor
-0.3
816
Normal
-0.3
488
Normal
-0.3
716
Normal
-0.3
527
Tumor
-0.3
964
Normal
-0.3
864
Normal
-0.3
884
Normal
-0.3
983
Tumor
-0.3
298
Normal
-0.3
636
Normal
-0.3
968
Normal
-0.3
1013
Tumor
-0.3
615
Tumor
-0.3
857
Tumor
-0.3
714
Normal
-0.3
937
Tumor
-0.4
466
Normal
-0.4
648
Normal
-0.4
431
Tumor
-0.4
874
Normal
-0.4
878
Normal
-0.4
867
Tumor
-0.4
428
Normal
-0.4
484
Normal
-0.4
866
Normal
-0.4
147
Tumor
-0.4
785
Tumor
-0.4
628
Normal
-0.4
975
Tumor
-0.4
538
Normal
-0.4
746
Normal
-0.4
912
Normal
-0.4
965
Tumor
-0.4
568
Normal
-0.4
558
Normal
-0.4
534
Normal
-0.4
312
Normal
-0.4
212
Normal
-0.4
327
Tumor
-0.4
354
Normal
-0.4
696
Normal
-0.4
616
Normal
-0.5
278
Normal
-0.5
918
Normal
-0.5
862
Normal
-0.5
922
Normal
-0.5
984
Normal
-0.5
1021
Tumor
-0.5
526
Normal
-0.5
982
Normal
-0.5
851
Tumor
-0.5
868
Normal
-0.5
698
Normal
-0.6
1026
Normal
-0.6
953
Tumor
-0.6
913
Tumor
-0.6
926
Normal
-0.6
647
Tumor
-0.6
916
Normal
-0.6
865
Tumor
-0.6
954
Normal
-0.6
1045
Tumor
-0.6
952
Normal
-0.6
956
Normal
-0.7
554
Normal
-0.7
963
Tumor
-0.7
478
Normal
-0.7
482
Normal
-0.7
924
Normal
-0.7
448
Normal
-0.7
1032
Normal
-0.7
1046
Normal
-0.7
1042
Normal
-0.7
171
Tumor
-0.7
1028
Normal
-0.8
955
Tumor
-0.8
1022
Normal
-0.8
938
Normal
-0.8
528
Normal
-0.8
1014
Normal
-0.8
944
Normal
-0.8
535
Tumor
-0.9
977
Tumor
-0.9
981
Tumor
-0.9
481
Tumor
-0.9
472
Normal
-1.0
1041
Tumor
-1.0
474
Normal
-1.0
516
Normal
-1.0
536
Normal
-1.0
911
Tumor
-1.2
425
Tumor
-1.3
915
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.