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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGB3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
360.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
356.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
315.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
287.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
248.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
228.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
215.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
193.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
192.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
183.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
182.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
180.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
171.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
170.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
167.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
166.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
165.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
164.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
163.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
156.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
156.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
155.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
155.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
151.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
147.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
146.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
137.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
136.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
134.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
133.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
132.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
127.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
124.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
121.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
119.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
118.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
118.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
117.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
116.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
115.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
114.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
114.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
111.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
111.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
110.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
108.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
107.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
102.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
101.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
99.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
98.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
96.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
95.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
94.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
94.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
92.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
91.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
89.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
87.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
86.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
81.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
81.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
81.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
81.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
79.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
79.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
79.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
79.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
77.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
77.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
75.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
75.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
75.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
74.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
73.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
73.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
73.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
72.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
72.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
71.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
71.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
70.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
70.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
70.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
69.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
69.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
68.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
68.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
68.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
68.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
67.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
66.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
65.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
65.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
65.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
63.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
63.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
62.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
62.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
62.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
61.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
61.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
60.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
60.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
60.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
59.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
59.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
59.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
59.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
59.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
59.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
58.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
57.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
57.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
57.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
57.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
56.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
56.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
56.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
55.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
54.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
54.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
54.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
53.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
51.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
51.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
51.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
51.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
50.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
50.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
47.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
46.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
46.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
46.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
45.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
45.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
44.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
44.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
43.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
43.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
41.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
41.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
39.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
39.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
39.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
38.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
31.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGB3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
167.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
79.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
66.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
57.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
36.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.8
523
Tumor
1.7
497
Tumor
1.5
923
Tumor
1.3
393
Tumor
1.3
785
Tumor
1.2
411
Tumor
1.2
983
Tumor
1.2
171
Tumor
1.2
525
Tumor
1.1
685
Tumor
1.1
863
Tumor
1.1
427
Tumor
1.1
343
Tumor
1.0
953
Tumor
1.0
125
Tumor
0.9
351
Tumor
0.9
357
Tumor
0.9
573
Tumor
0.9
267
Tumor
0.9
141
Tumor
0.8
857
Tumor
0.8
313
Tumor
0.8
385
Tumor
0.8
487
Tumor
0.8
813
Tumor
0.8
647
Tumor
0.7
873
Tumor
0.7
957
Tumor
0.7
1021
Tumor
0.7
635
Tumor
0.7
537
Tumor
0.7
467
Tumor
0.7
445
Tumor
0.7
937
Tumor
0.6
567
Tumor
0.6
257
Tumor
0.6
161
Tumor
0.6
865
Tumor
0.6
431
Tumor
0.6
1013
Tumor
0.6
533
Tumor
0.5
977
Tumor
0.5
443
Tumor
0.5
627
Tumor
0.5
695
Tumor
0.5
557
Tumor
0.5
913
Tumor
0.4
481
Tumor
0.4
965
Tumor
0.4
465
Tumor
0.4
815
Tumor
0.4
213
Tumor
0.4
755
Tumor
0.4
423
Tumor
0.4
447
Tumor
0.4
697
Tumor
0.3
355
Tumor
0.3
327
Tumor
0.3
361
Tumor
0.3
513
Tumor
0.3
737
Tumor
0.3
663
Tumor
0.3
463
Tumor
0.3
185
Tumor
0.3
283
Tumor
0.3
665
Tumor
0.3
413
Tumor
0.3
331
Tumor
0.3
661
Tumor
0.3
493
Tumor
0.2
823
Tumor
0.2
277
Tumor
0.2
721
Tumor
0.2
951
Tumor
0.2
483
Tumor
0.2
455
Tumor
0.2
383
Tumor
0.2
131
Tumor
0.2
917
Tumor
0.2
817
Tumor
0.1
112
Tumor
0.1
883
Tumor
0.1
777
Tumor
0.1
137
Tumor
0.1
375
Tumor
0.1
943
Tumor
0.1
1027
Tumor
0.1
367
Tumor
0.1
433
Tumor
0.1
473
Tumor
0.0
615
Tumor
0.0
963
Tumor
0.0
545
Tumor
0.0
498
Normal
0.0
671
Tumor
0.0
387
Tumor
0.0
461
Tumor
0.0
851
Tumor
0.0
1014
Normal
0.0
515
Tumor
0.0
745
Tumor
0.0
881
Tumor
-0.1
471
Tumor
-0.1
824
Normal
-0.1
954
Normal
-0.1
223
Tumor
-0.1
187
Tumor
-0.1
981
Tumor
-0.1
814
Normal
-0.1
518
Normal
-0.1
421
Tumor
-0.1
877
Tumor
-0.1
724
Normal
-0.1
365
Tumor
-0.1
328
Normal
-0.1
786
Normal
-0.1
938
Normal
-0.1
524
Normal
-0.2
135
Tumor
-0.2
861
Tumor
-0.2
425
Tumor
-0.2
916
Normal
-0.2
778
Normal
-0.2
921
Tumor
-0.2
984
Normal
-0.2
975
Tumor
-0.2
926
Normal
-0.2
756
Normal
-0.2
884
Normal
-0.2
563
Tumor
-0.2
713
Tumor
-0.2
491
Tumor
-0.2
462
Normal
-0.2
924
Normal
-0.2
727
Tumor
-0.2
686
Normal
-0.2
534
Normal
-0.3
492
Normal
-0.3
866
Normal
-0.3
922
Normal
-0.3
536
Normal
-0.3
113
Tumor
-0.3
195
Tumor
-0.3
978
Normal
-0.3
478
Normal
-0.3
148
Normal
-0.3
147
Tumor
-0.3
918
Normal
-0.3
472
Normal
-0.3
231
Tumor
-0.3
715
Tumor
-0.3
1045
Tumor
-0.3
364
Normal
-0.3
528
Normal
-0.3
538
Normal
-0.3
311
Tumor
-0.3
284
Normal
-0.3
964
Normal
-0.3
1032
Normal
-0.3
1016
Normal
-0.3
353
Tumor
-0.3
968
Normal
-0.3
882
Normal
-0.4
858
Normal
-0.4
966
Normal
-0.4
571
Tumor
-0.4
394
Normal
-0.4
211
Tumor
-0.4
714
Normal
-0.4
224
Normal
-0.4
484
Normal
-0.4
982
Normal
-0.4
1028
Normal
-0.4
344
Normal
-0.4
722
Normal
-0.4
286
Normal
-0.4
297
Tumor
-0.4
648
Normal
-0.4
474
Normal
-0.4
742
Normal
-0.4
356
Normal
-0.4
114
Normal
-0.4
1031
Tumor
-0.4
188
Normal
-0.4
212
Normal
-0.4
666
Normal
-0.4
925
Tumor
-0.4
628
Normal
-0.4
816
Normal
-0.4
145
Tumor
-0.4
482
Normal
-0.4
428
Normal
-0.4
142
Normal
-0.4
738
Normal
-0.4
434
Normal
-0.4
878
Normal
-0.5
868
Normal
-0.5
424
Normal
-0.5
976
Normal
-0.5
352
Normal
-0.5
741
Tumor
-0.5
172
Normal
-0.5
546
Normal
-0.5
967
Tumor
-0.5
191
Tumor
-0.5
514
Normal
-0.5
314
Normal
-0.5
126
Normal
-0.5
728
Normal
-0.5
862
Normal
-0.5
391
Tumor
-0.5
412
Normal
-0.5
852
Normal
-0.5
1015
Tumor
-0.5
716
Normal
-0.5
526
Normal
-0.5
818
Normal
-0.5
384
Normal
-0.5
1046
Normal
-0.5
358
Normal
-0.5
1026
Normal
-0.5
664
Normal
-0.5
723
Tumor
-0.5
1044
Normal
-0.5
228
Normal
-0.5
111
Normal
-0.5
944
Normal
-0.5
218
Normal
-0.5
488
Normal
-0.5
261
Tumor
-0.5
268
Normal
-0.6
396
Normal
-0.6
436
Normal
-0.6
952
Normal
-0.6
123
Tumor
-0.6
435
Tumor
-0.6
864
Normal
-0.6
874
Normal
-0.6
136
Normal
-0.6
672
Normal
-0.6
127
Tumor
-0.6
362
Normal
-0.6
376
Normal
-0.6
558
Normal
-0.6
386
Normal
-0.6
448
Normal
-0.6
466
Normal
-0.6
444
Normal
-0.6
955
Tumor
-0.6
746
Normal
-0.6
162
Normal
-0.6
192
Normal
-0.6
958
Normal
-0.6
912
Normal
-0.6
332
Normal
-0.6
312
Normal
-0.6
1042
Normal
-0.6
414
Normal
-0.6
262
Normal
-0.6
392
Normal
-0.6
696
Normal
-0.7
432
Normal
-0.7
698
Normal
-0.7
446
Normal
-0.7
535
Tumor
-0.7
914
Normal
-0.7
146
Normal
-0.7
232
Normal
-0.7
554
Normal
-0.7
214
Normal
-0.7
222
Normal
-0.7
368
Normal
-0.7
564
Normal
-0.7
395
Tumor
-0.7
217
Tumor
-0.7
196
Normal
-0.7
416
Normal
-0.7
662
Normal
-0.7
132
Normal
-0.7
867
Tumor
-0.7
341
Tumor
-0.7
956
Normal
-0.7
494
Normal
-0.7
258
Normal
-0.7
616
Normal
-0.7
641
Tumor
-0.7
642
Normal
-0.7
426
Normal
-0.7
298
Normal
-0.7
366
Normal
-0.7
568
Normal
-0.8
128
Normal
-0.8
516
Normal
-0.8
1022
Normal
-0.8
1025
Tumor
-0.8
456
Normal
-0.8
138
Normal
-0.8
464
Normal
-0.8
636
Normal
-0.8
422
Normal
-0.8
572
Normal
-0.8
278
Normal
-0.8
388
Normal
-0.8
272
Normal
-0.8
342
Normal
-0.8
574
Normal
-0.8
415
Tumor
-0.9
468
Normal
-0.9
744
Normal
-0.9
363
Tumor
-0.9
477
Tumor
-1.0
354
Normal
-1.0
271
Tumor
-1.0
124
Normal
-1.0
227
Tumor
-1.0
451
Tumor
-1.0
186
Normal
-1.0
1041
Tumor
-1.0
617
Tumor
-1.1
517
Tumor
-1.1
618
Normal
-1.1
285
Tumor
-1.1
911
Tumor
-1.1
1043
Tumor
-1.2
743
Tumor
-1.2
221
Tumor
-1.4
915
Tumor
-1.4
452
Normal
-1.4
553
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
