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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBPL1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBPL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
231
Samples
Sample
Description
TPM
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
672
Normal
0.8
445
Tumor
0.7
741
Tumor
0.7
465
Tumor
0.7
443
Tumor
0.6
698
Normal
0.6
391
Tumor
0.6
964
Normal
0.6
314
Normal
0.6
473
Tumor
0.6
313
Tumor
0.5
1016
Normal
0.5
466
Normal
0.5
463
Tumor
0.5
452
Normal
0.5
125
Tumor
0.5
431
Tumor
0.5
271
Tumor
0.5
211
Tumor
0.5
283
Tumor
0.5
738
Normal
0.5
332
Normal
0.4
138
Normal
0.4
863
Tumor
0.4
663
Tumor
0.4
267
Tumor
0.4
737
Tumor
0.4
477
Tumor
0.4
461
Tumor
0.4
187
Tumor
0.4
742
Normal
0.4
727
Tumor
0.4
723
Tumor
0.4
272
Normal
0.4
446
Normal
0.4
958
Normal
0.4
132
Normal
0.4
148
Normal
0.4
858
Normal
0.4
451
Tumor
0.3
223
Tumor
0.3
434
Normal
0.3
648
Normal
0.3
722
Normal
0.3
343
Tumor
0.3
662
Normal
0.3
455
Tumor
0.3
647
Tumor
0.3
665
Tumor
0.3
444
Normal
0.3
231
Tumor
0.3
728
Normal
0.3
777
Tumor
0.3
433
Tumor
0.3
664
Normal
0.3
128
Normal
0.3
432
Normal
0.3
661
Tumor
0.3
982
Normal
0.3
232
Normal
0.3
744
Normal
0.3
478
Normal
0.3
328
Normal
0.2
394
Normal
0.2
227
Tumor
0.2
914
Normal
0.2
456
Normal
0.2
353
Tumor
0.2
258
Normal
0.2
756
Normal
0.2
813
Tumor
0.2
147
Tumor
0.2
743
Tumor
0.2
724
Normal
0.2
298
Normal
0.2
112
Tumor
0.2
627
Tumor
0.2
416
Normal
0.2
196
Normal
0.2
172
Normal
0.2
671
Tumor
0.2
464
Normal
0.2
364
Normal
0.2
331
Tumor
0.2
814
Normal
0.2
111
Normal
0.2
137
Tumor
0.2
1021
Tumor
0.2
448
Normal
0.2
967
Tumor
0.2
162
Normal
0.2
1022
Normal
0.2
514
Normal
0.2
666
Normal
0.2
186
Normal
0.2
527
Tumor
0.2
222
Normal
0.2
388
Normal
0.2
436
Normal
0.1
396
Normal
0.1
468
Normal
0.1
1043
Tumor
0.1
435
Tumor
0.1
341
Tumor
0.1
268
Normal
0.1
354
Normal
0.1
976
Normal
0.1
188
Normal
0.1
262
Normal
0.1
146
Normal
0.1
563
Tumor
0.1
616
Normal
0.1
351
Tumor
0.1
574
Normal
0.1
358
Normal
0.1
564
Normal
0.1
482
Normal
0.1
864
Normal
0.1
357
Tumor
0.1
127
Tumor
0.1
978
Normal
0.1
1026
Normal
0.1
278
Normal
0.1
217
Tumor
0.1
957
Tumor
0.1
141
Tumor
0.1
447
Tumor
0.1
865
Tumor
0.1
786
Normal
0.1
285
Tumor
0.1
1032
Normal
0.1
312
Normal
0.1
145
Tumor
0.1
481
Tumor
0.1
471
Tumor
0.1
474
Normal
0.1
114
Normal
0.1
965
Tumor
0.1
618
Normal
0.1
636
Normal
0.1
1014
Normal
0.1
342
Normal
0.1
411
Tumor
0.1
867
Tumor
0.1
352
Normal
0.1
218
Normal
0.1
136
Normal
0.0
615
Tumor
0.0
257
Tumor
0.0
818
Normal
0.0
558
Normal
0.0
494
Normal
0.0
113
Tumor
0.0
926
Normal
0.0
968
Normal
0.0
498
Normal
0.0
686
Normal
0.0
356
Normal
0.0
123
Tumor
0.0
124
Normal
0.0
472
Normal
0.0
526
Normal
0.0
571
Tumor
0.0
573
Tumor
0.0
975
Tumor
0.0
824
Normal
0.0
714
Normal
0.0
488
Normal
0.0
1028
Normal
0.0
721
Tumor
0.0
261
Tumor
0.0
415
Tumor
0.0
214
Normal
0.0
484
Normal
-0.1
142
Normal
-0.1
393
Tumor
-0.1
635
Tumor
-0.1
185
Tumor
-0.1
567
Tumor
-0.1
1046
Normal
-0.1
716
Normal
-0.1
395
Tumor
-0.1
462
Normal
-0.1
344
Normal
-0.1
944
Normal
-0.1
467
Tumor
-0.1
816
Normal
-0.1
523
Tumor
-0.1
881
Tumor
-0.1
642
Normal
-0.1
861
Tumor
-0.1
277
Tumor
-0.1
852
Normal
-0.1
572
Normal
-0.1
912
Normal
-0.1
1042
Normal
-0.1
221
Tumor
-0.1
917
Tumor
-0.1
746
Normal
-0.1
228
Normal
-0.1
126
Normal
-0.1
857
Tumor
-0.1
868
Normal
-0.1
884
Normal
-0.2
866
Normal
-0.2
386
Normal
-0.2
212
Normal
-0.2
131
Tumor
-0.2
568
Normal
-0.2
696
Normal
-0.2
392
Normal
-0.2
966
Normal
-0.2
286
Normal
-0.2
192
Normal
-0.2
956
Normal
-0.2
517
Tumor
-0.2
224
Normal
-0.2
387
Tumor
-0.2
823
Tumor
-0.2
213
Tumor
-0.2
355
Tumor
-0.2
516
Normal
-0.2
641
Tumor
-0.2
533
Tumor
-0.2
171
Tumor
-0.2
327
Tumor
-0.2
778
Normal
-0.2
755
Tumor
-0.2
882
Normal
-0.2
1015
Tumor
-0.2
628
Normal
-0.2
862
Normal
-0.2
984
Normal
-0.3
745
Tumor
-0.3
954
Normal
-0.3
1045
Tumor
-0.3
412
Normal
-0.3
963
Tumor
-0.3
135
Tumor
-0.3
815
Tumor
-0.3
363
Tumor
-0.3
938
Normal
-0.3
713
Tumor
-0.3
953
Tumor
-0.3
874
Normal
-0.3
311
Tumor
-0.3
284
Normal
-0.3
518
Normal
-0.3
161
Tumor
-0.3
191
Tumor
-0.3
297
Tumor
-0.3
697
Tumor
-0.3
195
Tumor
-0.3
1031
Tumor
-0.3
785
Tumor
-0.3
513
Tumor
-0.3
915
Tumor
-0.3
385
Tumor
-0.3
911
Tumor
-0.3
873
Tumor
-0.3
617
Tumor
-0.4
817
Tumor
-0.4
922
Normal
-0.4
515
Tumor
-0.4
923
Tumor
-0.4
918
Normal
-0.4
524
Normal
-0.4
695
Tumor
-0.4
537
Tumor
-0.4
1027
Tumor
-0.4
916
Normal
-0.4
1025
Tumor
-0.4
557
Tumor
-0.5
535
Tumor
-0.5
981
Tumor
-0.5
955
Tumor
-0.5
877
Tumor
-0.5
492
Normal
-0.5
924
Normal
-0.5
1044
Normal
-0.5
715
Tumor
-0.5
1041
Tumor
-0.5
487
Tumor
-0.5
883
Tumor
-0.5
913
Tumor
-0.5
536
Normal
-0.5
538
Normal
-0.6
925
Tumor
-0.6
977
Tumor
-0.6
952
Normal
-0.6
553
Tumor
-0.6
851
Tumor
-0.6
921
Tumor
-0.6
497
Tumor
-0.7
525
Tumor
-0.7
491
Tumor
-0.7
545
Tumor
-0.7
983
Tumor
-0.7
493
Tumor
-0.7
1013
Tumor
-0.8
528
Normal
-0.8
534
Normal
-0.8
685
Tumor
-0.9
878
Normal
-0.9
546
Normal
-0.9
483
Tumor
-0.9
943
Tumor
-0.9
554
Normal
-0.9
937
Tumor
-1.0
951
Tumor
-1.0
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
