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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VRK2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VRK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.5
425
Tumor
0.9
665
Tumor
0.8
351
Tumor
0.8
517
Tumor
0.7
724
Normal
0.7
127
Tumor
0.7
137
Tumor
0.7
1015
Tumor
0.6
1043
Tumor
0.6
715
Tumor
0.6
975
Tumor
0.6
487
Tumor
0.6
743
Tumor
0.6
131
Tumor
0.6
967
Tumor
0.5
557
Tumor
0.5
777
Tumor
0.5
943
Tumor
0.5
573
Tumor
0.5
951
Tumor
0.5
925
Tumor
0.5
473
Tumor
0.4
367
Tumor
0.4
231
Tumor
0.4
427
Tumor
0.4
661
Tumor
0.4
965
Tumor
0.4
391
Tumor
0.4
171
Tumor
0.4
327
Tumor
0.3
145
Tumor
0.3
921
Tumor
0.3
414
Normal
0.3
1013
Tumor
0.3
533
Tumor
0.3
697
Tumor
0.3
361
Tumor
0.3
978
Normal
0.3
135
Tumor
0.3
567
Tumor
0.3
915
Tumor
0.3
365
Tumor
0.3
685
Tumor
0.3
426
Normal
0.3
497
Tumor
0.3
558
Normal
0.3
1016
Normal
0.2
1031
Tumor
0.2
358
Normal
0.2
283
Tumor
0.2
446
Normal
0.2
926
Normal
0.2
161
Tumor
0.2
471
Tumor
0.2
917
Tumor
0.2
187
Tumor
0.2
914
Normal
0.2
416
Normal
0.2
387
Tumor
0.2
857
Tumor
0.2
415
Tumor
0.2
138
Normal
0.2
966
Normal
0.2
257
Tumor
0.2
944
Normal
0.2
696
Normal
0.2
284
Normal
0.2
884
Normal
0.2
147
Tumor
0.2
527
Tumor
0.2
481
Tumor
0.2
671
Tumor
0.2
353
Tumor
0.2
913
Tumor
0.2
141
Tumor
0.2
568
Normal
0.2
977
Tumor
0.2
128
Normal
0.2
534
Normal
0.2
278
Normal
0.1
162
Normal
0.1
352
Normal
0.1
618
Normal
0.1
1045
Tumor
0.1
815
Tumor
0.1
968
Normal
0.1
357
Tumor
0.1
383
Tumor
0.1
428
Normal
0.1
716
Normal
0.1
461
Tumor
0.1
648
Normal
0.1
535
Tumor
0.1
285
Tumor
0.1
824
Normal
0.1
662
Normal
0.1
814
Normal
0.1
113
Tumor
0.1
518
Normal
0.1
537
Tumor
0.1
188
Normal
0.1
513
Tumor
0.1
474
Normal
0.1
232
Normal
0.1
964
Normal
0.1
861
Tumor
0.1
1044
Normal
0.1
412
Normal
0.1
491
Tumor
0.1
432
Normal
0.1
778
Normal
0.1
984
Normal
0.1
523
Tumor
0.1
823
Tumor
0.1
981
Tumor
0.1
488
Normal
0.1
368
Normal
0.1
952
Normal
0.1
227
Tumor
0.1
314
Normal
0.1
721
Tumor
0.1
627
Tumor
0.1
136
Normal
0.1
126
Normal
0.0
462
Normal
0.0
957
Tumor
0.0
344
Normal
0.0
1014
Normal
0.0
877
Tumor
0.0
422
Normal
0.0
737
Tumor
0.0
1046
Normal
0.0
466
Normal
0.0
146
Normal
0.0
436
Normal
0.0
572
Normal
0.0
482
Normal
0.0
356
Normal
0.0
922
Normal
0.0
443
Tumor
0.0
451
Tumor
0.0
311
Tumor
0.0
636
Normal
0.0
385
Tumor
0.0
745
Tumor
0.0
431
Tumor
0.0
312
Normal
0.0
923
Tumor
0.0
142
Normal
0.0
445
Tumor
0.0
467
Tumor
0.0
354
Normal
0.0
331
Tumor
0.0
698
Normal
0.0
111
Normal
0.0
342
Normal
0.0
392
Normal
0.0
976
Normal
0.0
916
Normal
0.0
172
Normal
0.0
647
Tumor
0.0
132
Normal
0.0
434
Normal
0.0
883
Tumor
0.0
858
Normal
0.0
873
Tumor
0.0
195
Tumor
0.0
271
Tumor
0.0
261
Tumor
0.0
375
Tumor
0.0
125
Tumor
0.0
722
Normal
0.0
498
Normal
0.0
332
Normal
0.0
666
Normal
0.0
343
Tumor
0.0
341
Tumor
0.0
114
Normal
0.0
328
Normal
0.0
213
Tumor
0.0
413
Tumor
0.0
983
Tumor
0.0
817
Tumor
0.0
617
Tumor
0.0
355
Tumor
0.0
574
Normal
0.0
686
Normal
0.0
538
Normal
-0.1
366
Normal
-0.1
472
Normal
-0.1
286
Normal
-0.1
267
Tumor
-0.1
867
Tumor
-0.1
741
Tumor
-0.1
421
Tumor
-0.1
411
Tumor
-0.1
553
Tumor
-0.1
865
Tumor
-0.1
222
Normal
-0.1
924
Normal
-0.1
313
Tumor
-0.1
866
Normal
-0.1
363
Tumor
-0.1
514
Normal
-0.1
912
Normal
-0.1
478
Normal
-0.1
1025
Tumor
-0.1
852
Normal
-0.1
868
Normal
-0.1
217
Tumor
-0.1
851
Tumor
-0.1
262
Normal
-0.1
862
Normal
-0.1
386
Normal
-0.1
483
Tumor
-0.1
384
Normal
-0.1
477
Tumor
-0.1
963
Tumor
-0.1
493
Tumor
-0.1
878
Normal
-0.1
191
Tumor
-0.1
982
Normal
-0.1
214
Normal
-0.1
616
Normal
-0.1
744
Normal
-0.1
628
Normal
-0.1
755
Tumor
-0.1
268
Normal
-0.1
148
Normal
-0.1
444
Normal
-0.1
546
Normal
-0.1
196
Normal
-0.1
526
Normal
-0.1
364
Normal
-0.1
938
Normal
-0.1
362
Normal
-0.1
528
Normal
-0.1
484
Normal
-0.1
297
Tumor
-0.1
874
Normal
-0.1
186
Normal
-0.1
492
Normal
-0.1
465
Tumor
-0.1
272
Normal
-0.1
298
Normal
-0.1
918
Normal
-0.1
228
Normal
-0.2
468
Normal
-0.2
388
Normal
-0.2
571
Tumor
-0.2
394
Normal
-0.2
536
Normal
-0.2
524
Normal
-0.2
1028
Normal
-0.2
448
Normal
-0.2
494
Normal
-0.2
663
Tumor
-0.2
727
Tumor
-0.2
218
Normal
-0.2
1021
Tumor
-0.2
785
Tumor
-0.2
464
Normal
-0.2
818
Normal
-0.2
864
Normal
-0.2
433
Tumor
-0.2
525
Tumor
-0.2
435
Tumor
-0.2
463
Tumor
-0.2
258
Normal
-0.2
756
Normal
-0.2
424
Normal
-0.2
564
Normal
-0.2
738
Normal
-0.3
911
Tumor
-0.3
1032
Normal
-0.3
786
Normal
-0.3
615
Tumor
-0.3
395
Tumor
-0.3
212
Normal
-0.3
742
Normal
-0.3
813
Tumor
-0.3
396
Normal
-0.3
882
Normal
-0.3
123
Tumor
-0.3
376
Normal
-0.3
816
Normal
-0.3
447
Tumor
-0.3
955
Tumor
-0.3
863
Tumor
-0.3
958
Normal
-0.3
746
Normal
-0.3
563
Tumor
-0.3
455
Tumor
-0.3
1027
Tumor
-0.3
515
Tumor
-0.3
937
Tumor
-0.3
642
Normal
-0.3
695
Tumor
-0.3
554
Normal
-0.3
723
Tumor
-0.3
112
Tumor
-0.3
221
Tumor
-0.3
124
Normal
-0.3
641
Tumor
-0.3
881
Tumor
-0.4
956
Normal
-0.4
393
Tumor
-0.4
423
Tumor
-0.4
953
Tumor
-0.4
224
Normal
-0.4
714
Normal
-0.4
545
Tumor
-0.4
452
Normal
-0.4
635
Tumor
-0.4
672
Normal
-0.4
223
Tumor
-0.4
1026
Normal
-0.4
954
Normal
-0.4
185
Tumor
-0.4
664
Normal
-0.5
516
Normal
-0.5
456
Normal
-0.5
1022
Normal
-0.5
1042
Normal
-0.5
192
Normal
-0.5
1041
Tumor
-0.5
728
Normal
-0.6
277
Tumor
-0.6
713
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
