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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTN3A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BTN3A1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
92.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
79.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
53.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
0.9
861
Tumor
0.9
915
Tumor
0.9
327
Tumor
0.8
1015
Tumor
0.8
914
Normal
0.8
966
Normal
0.7
663
Tumor
0.7
823
Tumor
0.7
113
Tumor
0.6
262
Normal
0.6
188
Normal
0.6
261
Tumor
0.6
917
Tumor
0.6
126
Normal
0.5
922
Normal
0.5
952
Normal
0.5
867
Tumor
0.5
123
Tumor
0.5
755
Tumor
0.5
386
Normal
0.5
362
Normal
0.5
741
Tumor
0.5
258
Normal
0.5
916
Normal
0.5
816
Normal
0.4
977
Tumor
0.4
478
Normal
0.4
467
Tumor
0.4
383
Tumor
0.4
1016
Normal
0.4
455
Tumor
0.4
366
Normal
0.4
114
Normal
0.4
211
Tumor
0.4
516
Normal
0.4
686
Normal
0.4
954
Normal
0.4
968
Normal
0.4
358
Normal
0.4
492
Normal
0.4
272
Normal
0.4
721
Tumor
0.4
456
Normal
0.4
493
Tumor
0.4
146
Normal
0.3
138
Normal
0.3
664
Normal
0.3
213
Tumor
0.3
955
Tumor
0.3
311
Tumor
0.3
513
Tumor
0.3
434
Normal
0.3
192
Normal
0.3
518
Normal
0.3
523
Tumor
0.3
353
Tumor
0.3
1031
Tumor
0.3
546
Normal
0.3
172
Normal
0.3
978
Normal
0.3
396
Normal
0.3
937
Tumor
0.3
148
Normal
0.3
534
Normal
0.3
218
Normal
0.3
918
Normal
0.3
938
Normal
0.3
212
Normal
0.3
111
Normal
0.3
342
Normal
0.3
468
Normal
0.3
666
Normal
0.3
574
Normal
0.3
648
Normal
0.3
756
Normal
0.3
524
Normal
0.3
432
Normal
0.3
926
Normal
0.3
416
Normal
0.3
852
Normal
0.3
984
Normal
0.3
553
Tumor
0.2
814
Normal
0.2
533
Tumor
0.2
913
Tumor
0.2
778
Normal
0.2
672
Normal
0.2
232
Normal
0.2
528
Normal
0.2
695
Tumor
0.2
554
Normal
0.2
685
Tumor
0.2
142
Normal
0.2
312
Normal
0.2
482
Normal
0.2
355
Tumor
0.2
384
Normal
0.2
956
Normal
0.2
147
Tumor
0.2
538
Normal
0.2
924
Normal
0.2
412
Normal
0.2
514
Normal
0.2
136
Normal
0.2
786
Normal
0.2
724
Normal
0.2
777
Tumor
0.2
472
Normal
0.2
141
Tumor
0.2
448
Normal
0.2
222
Normal
0.2
494
Normal
0.2
415
Tumor
0.2
474
Normal
0.2
284
Normal
0.2
976
Normal
0.2
738
Normal
0.2
228
Normal
0.2
332
Normal
0.2
866
Normal
0.2
344
Normal
0.1
557
Tumor
0.1
185
Tumor
0.1
862
Normal
0.1
491
Tumor
0.1
268
Normal
0.1
186
Normal
0.1
354
Normal
0.1
744
Normal
0.1
1044
Normal
0.1
911
Tumor
0.1
982
Normal
0.1
426
Normal
0.1
558
Normal
0.1
283
Tumor
0.1
128
Normal
0.1
716
Normal
0.1
925
Tumor
0.1
964
Normal
0.1
124
Normal
0.1
462
Normal
0.1
572
Normal
0.1
1043
Tumor
0.1
863
Tumor
0.1
864
Normal
0.1
882
Normal
0.1
981
Tumor
0.1
963
Tumor
0.1
446
Normal
0.1
137
Tumor
0.0
536
Normal
0.0
498
Normal
0.0
696
Normal
0.0
392
Normal
0.0
436
Normal
0.0
278
Normal
0.0
452
Normal
0.0
444
Normal
0.0
394
Normal
0.0
723
Tumor
0.0
636
Normal
0.0
365
Tumor
0.0
368
Normal
0.0
422
Normal
0.0
868
Normal
0.0
191
Tumor
0.0
388
Normal
0.0
874
Normal
0.0
464
Normal
0.0
1022
Normal
0.0
395
Tumor
0.0
364
Normal
0.0
742
Normal
0.0
196
Normal
0.0
746
Normal
0.0
195
Tumor
0.0
618
Normal
0.0
698
Normal
0.0
481
Tumor
0.0
878
Normal
0.0
132
Normal
0.0
328
Normal
-0.1
376
Normal
-0.1
217
Tumor
-0.1
145
Tumor
-0.1
356
Normal
-0.1
298
Normal
-0.1
722
Normal
-0.1
286
Normal
-0.1
352
Normal
-0.1
526
Normal
-0.1
447
Tumor
-0.1
728
Normal
-0.1
385
Tumor
-0.1
1042
Normal
-0.1
461
Tumor
-0.1
1032
Normal
-0.1
127
Tumor
-0.1
341
Tumor
-0.1
135
Tumor
-0.1
466
Normal
-0.1
214
Normal
-0.1
785
Tumor
-0.1
387
Tumor
-0.2
1027
Tumor
-0.2
471
Tumor
-0.2
428
Normal
-0.2
187
Tumor
-0.2
818
Normal
-0.2
813
Tumor
-0.2
714
Normal
-0.2
975
Tumor
-0.2
227
Tumor
-0.2
451
Tumor
-0.2
745
Tumor
-0.2
1045
Tumor
-0.2
224
Normal
-0.2
564
Normal
-0.2
865
Tumor
-0.2
824
Normal
-0.2
1014
Normal
-0.2
443
Tumor
-0.2
361
Tumor
-0.2
635
Tumor
-0.2
615
Tumor
-0.2
313
Tumor
-0.2
628
Normal
-0.2
515
Tumor
-0.2
617
Tumor
-0.2
414
Normal
-0.2
497
Tumor
-0.2
1028
Normal
-0.2
112
Tumor
-0.2
616
Normal
-0.2
314
Normal
-0.2
393
Tumor
-0.3
433
Tumor
-0.3
1046
Normal
-0.3
391
Tumor
-0.3
944
Normal
-0.3
161
Tumor
-0.3
488
Normal
-0.3
568
Normal
-0.3
423
Tumor
-0.3
343
Tumor
-0.3
424
Normal
-0.3
923
Tumor
-0.3
873
Tumor
-0.3
881
Tumor
-0.3
484
Normal
-0.3
535
Tumor
-0.3
221
Tumor
-0.3
958
Normal
-0.3
477
Tumor
-0.3
162
Normal
-0.3
858
Normal
-0.3
527
Tumor
-0.3
951
Tumor
-0.3
517
Tumor
-0.3
627
Tumor
-0.3
1041
Tumor
-0.3
267
Tumor
-0.3
943
Tumor
-0.4
647
Tumor
-0.4
125
Tumor
-0.4
421
Tumor
-0.4
953
Tumor
-0.4
642
Normal
-0.4
857
Tumor
-0.4
883
Tumor
-0.4
257
Tumor
-0.4
983
Tumor
-0.4
231
Tumor
-0.4
171
Tumor
-0.4
884
Normal
-0.4
363
Tumor
-0.4
573
Tumor
-0.4
525
Tumor
-0.5
563
Tumor
-0.5
715
Tumor
-0.5
375
Tumor
-0.5
223
Tumor
-0.5
571
Tumor
-0.5
713
Tumor
-0.5
483
Tumor
-0.6
965
Tumor
-0.6
545
Tumor
-0.6
697
Tumor
-0.6
427
Tumor
-0.6
957
Tumor
-0.6
665
Tumor
-0.6
1021
Tumor
-0.6
425
Tumor
-0.6
357
Tumor
-0.7
473
Tumor
-0.7
661
Tumor
-0.7
367
Tumor
-0.7
921
Tumor
-0.7
727
Tumor
-0.7
1026
Normal
-0.7
411
Tumor
-0.7
431
Tumor
-0.7
413
Tumor
-0.8
912
Normal
-0.8
445
Tumor
-0.8
662
Normal
-0.8
671
Tumor
-0.8
817
Tumor
-0.8
1013
Tumor
-0.8
465
Tumor
-0.9
567
Tumor
-0.9
537
Tumor
-0.9
271
Tumor
-0.9
351
Tumor
-0.9
641
Tumor
-0.9
297
Tumor
-0.9
435
Tumor
-1.0
851
Tumor
-1.0
737
Tumor
-1.0
1025
Tumor
-1.0
815
Tumor
-1.0
285
Tumor
-1.1
967
Tumor
-1.1
877
Tumor
-1.1
331
Tumor
-1.1
463
Tumor
-1.3
131
Tumor
-1.4
743
Tumor
-2.0
277
Tumor
-3.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
