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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNASET2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
281.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
277.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
248.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
159.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
155.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
152.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
152.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
151.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
118.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
117.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
111.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
110.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
107.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
107.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
102.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
98.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
98.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
93.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
87.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
86.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
83.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
83.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
81.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
80.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
78.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
77.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
76.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
76.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
75.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
73.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
72.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
70.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
70.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
68.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
68.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
66.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
66.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
66.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
65.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
63.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
63.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
63.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
63.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
62.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
62.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
62.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
61.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
60.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
59.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
58.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
58.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
57.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
56.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
56.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
56.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
55.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
55.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
55.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
53.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
53.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
53.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
52.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
52.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
52.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
51.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
50.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
49.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
47.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
45.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
44.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
42.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
42.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
41.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
40.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
40.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
37.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
34.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
33.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
32.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
32.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
31.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNASET2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.5
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
639.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
387.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
293.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
221.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
192.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
173.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
170.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
166.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
163.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
127.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
126.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
118.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
118.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
94.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
93.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
88.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
84.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
81.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
81.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
79.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
77.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
75.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
73.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
71.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
70.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
66.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
65.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
64.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
62.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
61.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
60.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
59.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
58.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
58.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
57.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
57.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
57.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
56.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
56.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
56.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
55.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
55.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
54.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
54.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
51.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
48.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
47.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
47.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
46.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
46.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
46.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
45.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
44.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
42.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
41.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
41.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
38.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
27.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.6
817
Tumor
1.5
921
Tumor
1.3
697
Tumor
1.0
744
Normal
1.0
538
Normal
0.9
975
Tumor
0.9
367
Tumor
0.9
124
Normal
0.9
186
Normal
0.8
952
Normal
0.8
661
Tumor
0.8
394
Normal
0.7
363
Tumor
0.7
467
Tumor
0.7
221
Tumor
0.7
344
Normal
0.7
738
Normal
0.7
881
Tumor
0.7
641
Tumor
0.7
434
Normal
0.6
111
Normal
0.6
642
Normal
0.6
114
Normal
0.6
778
Normal
0.6
878
Normal
0.6
746
Normal
0.6
332
Normal
0.6
217
Tumor
0.6
272
Normal
0.6
662
Normal
0.6
342
Normal
0.6
955
Tumor
0.6
214
Normal
0.6
713
Tumor
0.5
131
Tumor
0.5
686
Normal
0.5
568
Normal
0.5
518
Normal
0.5
352
Normal
0.5
368
Normal
0.5
636
Normal
0.5
125
Tumor
0.5
474
Normal
0.5
472
Normal
0.5
1021
Tumor
0.5
816
Normal
0.5
938
Normal
0.5
452
Normal
0.5
462
Normal
0.5
554
Normal
0.5
412
Normal
0.5
232
Normal
0.5
618
Normal
0.5
482
Normal
0.5
436
Normal
0.5
492
Normal
0.5
362
Normal
0.5
358
Normal
0.5
984
Normal
0.5
943
Tumor
0.4
426
Normal
0.4
743
Tumor
0.4
432
Normal
0.4
924
Normal
0.4
271
Tumor
0.4
471
Tumor
0.4
128
Normal
0.4
478
Normal
0.4
574
Normal
0.4
172
Normal
0.4
877
Tumor
0.4
558
Normal
0.4
572
Normal
0.4
218
Normal
0.4
473
Tumor
0.4
414
Normal
0.4
356
Normal
0.4
564
Normal
0.4
258
Normal
0.4
395
Tumor
0.4
494
Normal
0.4
944
Normal
0.4
1044
Normal
0.4
268
Normal
0.4
966
Normal
0.4
498
Normal
0.4
286
Normal
0.4
917
Tumor
0.4
354
Normal
0.4
262
Normal
0.4
376
Normal
0.4
488
Normal
0.4
742
Normal
0.4
1026
Normal
0.4
528
Normal
0.4
698
Normal
0.4
983
Tumor
0.4
918
Normal
0.4
212
Normal
0.4
815
Tumor
0.4
1028
Normal
0.4
956
Normal
0.3
126
Normal
0.3
546
Normal
0.3
366
Normal
0.3
728
Normal
0.3
278
Normal
0.3
968
Normal
0.3
722
Normal
0.3
224
Normal
0.3
526
Normal
0.3
147
Tumor
0.3
824
Normal
0.3
343
Tumor
0.3
663
Tumor
0.3
916
Normal
0.3
851
Tumor
0.3
756
Normal
0.3
976
Normal
0.3
716
Normal
0.3
527
Tumor
0.3
1016
Normal
0.3
146
Normal
0.3
211
Tumor
0.3
138
Normal
0.3
852
Normal
0.3
567
Tumor
0.3
664
Normal
0.3
132
Normal
0.3
721
Tumor
0.3
964
Normal
0.3
484
Normal
0.3
858
Normal
0.3
553
Tumor
0.3
573
Tumor
0.3
536
Normal
0.3
982
Normal
0.3
188
Normal
0.3
468
Normal
0.3
723
Tumor
0.2
422
Normal
0.2
136
Normal
0.2
648
Normal
0.2
283
Tumor
0.2
524
Normal
0.2
385
Tumor
0.2
364
Normal
0.2
672
Normal
0.2
874
Normal
0.2
162
Normal
0.2
222
Normal
0.2
142
Normal
0.2
1015
Tumor
0.2
617
Tumor
0.2
862
Normal
0.2
954
Normal
0.2
387
Tumor
0.2
384
Normal
0.2
386
Normal
0.2
196
Normal
0.2
314
Normal
0.2
958
Normal
0.2
298
Normal
0.2
628
Normal
0.2
328
Normal
0.2
391
Tumor
0.2
464
Normal
0.1
1014
Normal
0.1
312
Normal
0.1
446
Normal
0.1
516
Normal
0.1
818
Normal
0.1
148
Normal
0.1
448
Normal
0.1
1031
Tumor
0.1
311
Tumor
0.1
864
Normal
0.1
396
Normal
0.1
424
Normal
0.1
535
Tumor
0.1
444
Normal
0.1
388
Normal
0.1
517
Tumor
0.1
922
Normal
0.1
1022
Normal
0.1
926
Normal
0.1
1032
Normal
0.1
912
Normal
0.1
428
Normal
0.1
666
Normal
0.1
786
Normal
0.1
267
Tumor
0.1
823
Tumor
0.1
866
Normal
0.0
616
Normal
0.0
882
Normal
0.0
1045
Tumor
0.0
185
Tumor
0.0
514
Normal
0.0
714
Normal
0.0
447
Tumor
0.0
915
Tumor
0.0
285
Tumor
0.0
963
Tumor
0.0
696
Normal
0.0
911
Tumor
N/A
228
Normal
0.0
857
Tumor
0.0
884
Normal
0.0
1042
Normal
0.0
534
Normal
0.0
537
Tumor
0.0
435
Tumor
0.0
113
Tumor
0.0
451
Tumor
0.0
456
Normal
0.0
937
Tumor
0.0
1046
Normal
-0.1
957
Tumor
-0.1
461
Tumor
-0.1
192
Normal
-0.1
491
Tumor
-0.1
195
Tumor
-0.1
724
Normal
-0.1
261
Tumor
-0.1
112
Tumor
-0.1
284
Normal
-0.1
191
Tumor
-0.1
466
Normal
-0.1
223
Tumor
-0.1
392
Normal
-0.1
868
Normal
-0.1
647
Tumor
-0.1
814
Normal
-0.1
914
Normal
-0.1
415
Tumor
-0.1
925
Tumor
-0.1
1027
Tumor
-0.2
481
Tumor
-0.2
965
Tumor
-0.2
865
Tumor
-0.2
213
Tumor
-0.2
978
Normal
-0.2
665
Tumor
-0.2
416
Normal
-0.2
777
Tumor
-0.2
861
Tumor
-0.2
685
Tumor
-0.2
383
Tumor
-0.2
1043
Tumor
-0.2
227
Tumor
-0.2
967
Tumor
-0.2
883
Tumor
-0.2
137
Tumor
-0.2
463
Tumor
-0.2
477
Tumor
-0.2
375
Tumor
-0.3
421
Tumor
-0.3
557
Tumor
-0.3
277
Tumor
-0.3
953
Tumor
-0.3
515
Tumor
-0.3
365
Tumor
-0.3
145
Tumor
-0.3
331
Tumor
-0.3
671
Tumor
-0.3
231
Tumor
-0.3
873
Tumor
-0.3
257
Tumor
-0.3
525
Tumor
-0.4
715
Tumor
-0.4
867
Tumor
-0.4
351
Tumor
-0.4
431
Tumor
-0.4
141
Tumor
-0.4
755
Tumor
-0.4
913
Tumor
-0.5
443
Tumor
-0.5
433
Tumor
-0.5
741
Tumor
-0.5
313
Tumor
-0.5
411
Tumor
-0.5
863
Tumor
-0.5
361
Tumor
-0.5
563
Tumor
-0.5
923
Tumor
-0.5
353
Tumor
-0.5
745
Tumor
-0.6
341
Tumor
-0.6
1041
Tumor
-0.6
497
Tumor
-0.6
187
Tumor
-0.6
571
Tumor
-0.6
1013
Tumor
-0.6
981
Tumor
-0.6
423
Tumor
-0.6
123
Tumor
-0.6
545
Tumor
-0.6
493
Tumor
-0.6
327
Tumor
-0.6
977
Tumor
-0.6
785
Tumor
-0.6
127
Tumor
-0.6
813
Tumor
-0.6
445
Tumor
-0.7
483
Tumor
-0.7
297
Tumor
-0.7
487
Tumor
-0.7
135
Tumor
-0.7
355
Tumor
-0.7
627
Tumor
-0.7
427
Tumor
-0.8
455
Tumor
-0.8
615
Tumor
-0.9
1025
Tumor
-0.9
161
Tumor
-0.9
413
Tumor
-0.9
393
Tumor
-0.9
523
Tumor
-1.0
727
Tumor
-1.0
737
Tumor
-1.0
425
Tumor
-1.1
171
Tumor
-1.2
635
Tumor
-1.2
357
Tumor
-1.2
513
Tumor
-1.3
465
Tumor
-1.3
695
Tumor
-1.5
533
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
