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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KPNA6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KPNA6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
0.5
393
Tumor
0.5
125
Tumor
0.5
1027
Tumor
0.4
257
Tumor
0.4
171
Tumor
0.4
283
Tumor
0.4
327
Tumor
0.4
395
Tumor
0.3
567
Tumor
0.3
1013
Tumor
0.3
391
Tumor
0.3
313
Tumor
0.3
663
Tumor
0.3
375
Tumor
0.2
557
Tumor
0.2
533
Tumor
0.2
513
Tumor
0.2
231
Tumor
0.2
147
Tumor
0.2
777
Tumor
0.2
387
Tumor
0.2
943
Tumor
0.2
741
Tumor
0.2
937
Tumor
0.2
355
Tumor
0.2
728
Normal
0.2
1021
Tumor
0.2
864
Normal
0.2
965
Tumor
0.2
123
Tumor
0.2
571
Tumor
0.2
436
Normal
0.2
851
Tumor
0.1
527
Tumor
0.1
738
Normal
0.1
926
Normal
0.1
953
Tumor
0.1
745
Tumor
0.1
661
Tumor
0.1
351
Tumor
0.1
727
Tumor
0.1
874
Normal
0.1
416
Normal
0.1
746
Normal
0.1
863
Tumor
0.1
141
Tumor
0.1
925
Tumor
0.1
385
Tumor
0.1
343
Tumor
0.1
865
Tumor
0.1
137
Tumor
0.1
328
Normal
0.1
914
Normal
0.1
161
Tumor
0.1
685
Tumor
0.1
472
Normal
0.1
952
Normal
0.1
145
Tumor
0.1
412
Normal
0.1
124
Normal
0.1
816
Normal
0.1
267
Tumor
0.1
862
Normal
0.1
474
Normal
0.1
858
Normal
0.1
515
Tumor
0.1
778
Normal
0.1
724
Normal
0.1
223
Tumor
0.1
365
Tumor
0.1
462
Normal
0.1
491
Tumor
0.1
911
Tumor
0.1
982
Normal
0.1
286
Normal
0.1
518
Normal
0.1
258
Normal
0.1
742
Normal
0.0
918
Normal
0.0
461
Tumor
0.0
262
Normal
0.0
113
Tumor
0.0
956
Normal
0.0
824
Normal
0.0
866
Normal
0.0
1016
Normal
0.0
222
Normal
0.0
484
Normal
0.0
924
Normal
0.0
944
Normal
0.0
364
Normal
0.0
723
Tumor
0.0
356
Normal
0.0
114
Normal
0.0
128
Normal
0.0
357
Tumor
0.0
396
Normal
0.0
136
Normal
0.0
497
Tumor
0.0
138
Normal
0.0
465
Tumor
0.0
448
Normal
0.0
132
Normal
0.0
427
Tumor
0.0
916
Normal
0.0
981
Tumor
0.0
1026
Normal
0.0
487
Tumor
0.0
868
Normal
0.0
852
Normal
0.0
185
Tumor
0.0
218
Normal
0.0
228
Normal
0.0
162
Normal
0.0
111
Normal
0.0
938
Normal
0.0
272
Normal
0.0
422
Normal
0.0
861
Tumor
0.0
698
Normal
0.0
713
Tumor
0.0
915
Tumor
0.0
386
Normal
0.0
696
Normal
0.0
714
Normal
0.0
913
Tumor
0.0
186
Normal
0.0
955
Tumor
0.0
388
Normal
0.0
528
Normal
0.0
341
Tumor
0.0
756
Normal
0.0
554
Normal
0.0
278
Normal
0.0
414
Normal
0.0
636
Normal
0.0
642
Normal
0.0
922
Normal
0.0
564
Normal
0.0
722
Normal
0.0
423
Tumor
0.0
883
Tumor
0.0
755
Tumor
0.0
277
Tumor
0.0
525
Tumor
0.0
172
Normal
0.0
298
Normal
0.0
392
Normal
0.0
568
Normal
0.0
786
Normal
0.0
737
Tumor
0.0
537
Tumor
0.0
394
Normal
0.0
857
Tumor
0.0
232
Normal
0.0
493
Tumor
0.0
434
Normal
0.0
268
Normal
0.0
617
Tumor
0.0
618
Normal
0.0
261
Tumor
0.0
482
Normal
0.0
1014
Normal
0.0
785
Tumor
0.0
358
Normal
0.0
213
Tumor
-0.1
342
Normal
-0.1
142
Normal
-0.1
285
Tumor
-0.1
627
Tumor
-0.1
464
Normal
-0.1
526
Normal
-0.1
494
Normal
-0.1
146
Normal
-0.1
367
Tumor
-0.1
311
Tumor
-0.1
978
Normal
-0.1
818
Normal
-0.1
212
Normal
-0.1
314
Normal
-0.1
882
Normal
-0.1
814
Normal
-0.1
563
Tumor
-0.1
432
Normal
-0.1
574
Normal
-0.1
353
Tumor
-0.1
428
Normal
-0.1
976
Normal
-0.1
452
Normal
-0.1
366
Normal
-0.1
616
Normal
-0.1
964
Normal
-0.1
923
Tumor
-0.1
413
Tumor
-0.1
534
Normal
-0.1
492
Normal
-0.1
126
Normal
-0.1
966
Normal
-0.1
456
Normal
-0.1
344
Normal
-0.1
195
Tumor
-0.1
1022
Normal
-0.1
148
Normal
-0.1
878
Normal
-0.1
813
Tumor
-0.1
188
Normal
-0.1
312
Normal
-0.1
744
Normal
-0.1
716
Normal
-0.1
686
Normal
-0.1
647
Tumor
-0.1
425
Tumor
-0.1
546
Normal
-0.1
451
Tumor
-0.1
884
Normal
-0.1
217
Tumor
-0.1
628
Normal
-0.1
415
Tumor
-0.1
1046
Normal
-0.1
1042
Normal
-0.1
455
Tumor
-0.1
214
Normal
-0.1
363
Tumor
-0.1
284
Normal
-0.1
431
Tumor
-0.1
968
Normal
-0.1
1028
Normal
-0.1
112
Tumor
-0.1
435
Tumor
-0.1
468
Normal
-0.1
615
Tumor
-0.1
411
Tumor
-0.1
664
Normal
-0.1
481
Tumor
-0.1
463
Tumor
-0.1
917
Tumor
-0.1
227
Tumor
-0.1
912
Normal
-0.1
1015
Tumor
-0.1
196
Normal
-0.1
426
Normal
-0.1
648
Normal
-0.1
635
Tumor
-0.1
881
Tumor
-0.1
954
Normal
-0.1
376
Normal
-0.1
271
Tumor
-0.1
483
Tumor
-0.2
466
Normal
-0.2
951
Tumor
-0.2
361
Tumor
-0.2
192
Normal
-0.2
488
Normal
-0.2
984
Normal
-0.2
572
Normal
-0.2
977
Tumor
-0.2
362
Normal
-0.2
498
Normal
-0.2
558
Normal
-0.2
662
Normal
-0.2
224
Normal
-0.2
815
Tumor
-0.2
867
Tumor
-0.2
697
Tumor
-0.2
352
Normal
-0.2
135
Tumor
-0.2
332
Normal
-0.2
524
Normal
-0.2
695
Tumor
-0.2
721
Tumor
-0.2
516
Normal
-0.2
1044
Normal
-0.2
446
Normal
-0.2
433
Tumor
-0.2
421
Tumor
-0.2
817
Tumor
-0.2
1041
Tumor
-0.2
1045
Tumor
-0.2
523
Tumor
-0.2
957
Tumor
-0.2
467
Tumor
-0.2
368
Normal
-0.2
538
Normal
-0.2
536
Normal
-0.2
877
Tumor
-0.2
514
Normal
-0.2
1032
Normal
-0.2
211
Tumor
-0.2
823
Tumor
-0.2
443
Tumor
-0.2
297
Tumor
-0.3
424
Normal
-0.3
221
Tumor
-0.3
383
Tumor
-0.3
545
Tumor
-0.3
873
Tumor
-0.3
666
Normal
-0.3
354
Normal
-0.3
963
Tumor
-0.3
478
Normal
-0.3
447
Tumor
-0.3
983
Tumor
-0.3
517
Tumor
-0.3
445
Tumor
-0.3
187
Tumor
-0.3
127
Tumor
-0.3
672
Normal
-0.3
535
Tumor
-0.3
1025
Tumor
-0.3
384
Normal
-0.4
331
Tumor
-0.4
444
Normal
-0.4
477
Tumor
-0.4
1043
Tumor
-0.4
191
Tumor
-0.4
958
Normal
-0.4
743
Tumor
-0.4
131
Tumor
-0.4
671
Tumor
-0.4
473
Tumor
-0.4
921
Tumor
-0.5
715
Tumor
-0.5
975
Tumor
-0.5
553
Tumor
-0.5
967
Tumor
-0.5
665
Tumor
-0.5
641
Tumor
-0.5
1031
Tumor
-0.6
471
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
