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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC63 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC63 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
231
Samples
Sample
Description
TPM
DO50778
0 years, male, NA, stage:4, alive, 630 days
70.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
53.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
37.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
353
Tumor
0.9
713
Tumor
0.7
221
Tumor
0.6
1021
Tumor
0.6
431
Tumor
0.5
341
Tumor
0.5
663
Tumor
0.5
123
Tumor
0.5
527
Tumor
0.5
435
Tumor
0.5
537
Tumor
0.4
923
Tumor
0.4
647
Tumor
0.4
571
Tumor
0.4
271
Tumor
0.4
196
Normal
0.4
1015
Tumor
0.4
314
Normal
0.4
564
Normal
0.4
1022
Normal
0.3
448
Normal
0.3
648
Normal
0.3
258
Normal
0.3
1046
Normal
0.3
466
Normal
0.3
452
Normal
0.3
616
Normal
0.3
617
Tumor
0.3
232
Normal
0.3
861
Tumor
0.3
724
Normal
0.3
568
Normal
0.3
172
Normal
0.3
572
Normal
0.3
815
Tumor
0.3
422
Normal
0.3
636
Normal
0.3
128
Normal
0.3
388
Normal
0.3
864
Normal
0.3
1016
Normal
0.3
356
Normal
0.3
698
Normal
0.3
436
Normal
0.3
358
Normal
0.3
446
Normal
0.3
881
Tumor
0.3
912
Normal
0.3
426
Normal
0.3
148
Normal
0.3
145
Tumor
0.3
162
Normal
0.3
723
Tumor
0.3
862
Normal
0.2
1044
Normal
0.2
944
Normal
0.2
222
Normal
0.2
214
Normal
0.2
414
Normal
0.2
742
Normal
0.2
1026
Normal
0.2
421
Tumor
0.2
738
Normal
0.2
534
Normal
0.2
132
Normal
0.2
741
Tumor
0.2
696
Normal
0.2
1031
Tumor
0.2
914
Normal
0.2
412
Normal
0.2
387
Tumor
0.2
186
Normal
0.2
332
Normal
0.2
746
Normal
0.2
628
Normal
0.2
286
Normal
0.2
824
Normal
0.2
111
Normal
0.2
136
Normal
0.2
342
Normal
0.2
432
Normal
0.2
722
Normal
0.2
142
Normal
0.2
272
Normal
0.2
455
Tumor
0.2
955
Tumor
0.2
147
Tumor
0.2
922
Normal
0.2
1032
Normal
0.2
546
Normal
0.2
728
Normal
0.2
866
Normal
0.2
786
Normal
0.2
464
Normal
0.2
462
Normal
0.2
716
Normal
0.2
756
Normal
0.2
443
Tumor
0.2
938
Normal
0.2
484
Normal
0.2
278
Normal
0.2
313
Tumor
0.2
1042
Normal
0.2
714
Normal
0.2
497
Tumor
0.2
424
Normal
0.2
697
Tumor
0.2
228
Normal
0.2
518
Normal
0.2
528
Normal
0.1
227
Tumor
0.1
755
Tumor
0.1
494
Normal
0.1
964
Normal
0.1
618
Normal
0.1
396
Normal
0.1
882
Normal
0.1
327
Tumor
0.1
664
Normal
0.1
428
Normal
0.1
721
Tumor
0.1
284
Normal
0.1
188
Normal
0.1
574
Normal
0.1
514
Normal
0.1
1013
Tumor
0.1
878
Normal
0.1
138
Normal
0.1
331
Tumor
0.1
217
Tumor
0.1
852
Normal
0.1
394
Normal
0.1
1028
Normal
0.1
113
Tumor
0.1
223
Tumor
0.1
354
Normal
0.1
376
Normal
0.1
956
Normal
0.1
328
Normal
0.1
218
Normal
0.1
488
Normal
0.1
368
Normal
0.1
918
Normal
0.1
367
Tumor
0.1
312
Normal
0.1
482
Normal
0.1
686
Normal
0.1
137
Tumor
0.1
816
Normal
0.1
924
Normal
0.1
1014
Normal
0.1
298
Normal
0.1
662
Normal
0.1
361
Tumor
0.1
363
Tumor
0.1
212
Normal
0.1
262
Normal
0.1
982
Normal
0.1
114
Normal
0.1
558
Normal
0.1
868
Normal
0.1
926
Normal
0.1
968
Normal
0.1
474
Normal
0.1
135
Tumor
0.1
563
Tumor
0.1
858
Normal
0.1
978
Normal
0.1
392
Normal
0.1
261
Tumor
0.1
355
Tumor
0.1
984
Normal
0.1
1043
Tumor
0.1
642
Normal
0.1
472
Normal
0.1
958
Normal
0.1
777
Tumor
0.0
967
Tumor
0.0
745
Tumor
0.0
526
Normal
0.0
873
Tumor
0.0
981
Tumor
0.0
456
Normal
0.0
362
Normal
0.0
357
Tumor
0.0
277
Tumor
0.0
666
Normal
0.0
921
Tumor
0.0
983
Tumor
0.0
554
Normal
0.0
366
Normal
0.0
468
Normal
0.0
884
Normal
0.0
818
Normal
0.0
778
Normal
0.0
473
Tumor
0.0
1045
Tumor
0.0
867
Tumor
0.0
491
Tumor
0.0
187
Tumor
0.0
966
Normal
0.0
952
Normal
0.0
384
Normal
0.0
976
Normal
0.0
268
Normal
0.0
515
Tumor
0.0
851
Tumor
0.0
124
Normal
0.0
434
Normal
0.0
146
Normal
0.0
883
Tumor
0.0
416
Normal
0.0
445
Tumor
0.0
364
Normal
0.0
471
Tumor
0.0
395
Tumor
0.0
344
Normal
0.0
874
Normal
0.0
191
Tumor
0.0
126
Normal
0.0
954
Normal
0.0
125
Tumor
0.0
913
Tumor
-0.1
351
Tumor
-0.1
823
Tumor
-0.1
352
Normal
-0.1
386
Normal
-0.1
553
Tumor
-0.1
977
Tumor
-0.1
925
Tumor
-0.1
665
Tumor
-0.1
516
Normal
-0.1
141
Tumor
-0.1
481
Tumor
-0.1
915
Tumor
-0.1
744
Normal
-0.1
444
Normal
-0.1
963
Tumor
-0.1
463
Tumor
-0.1
672
Normal
-0.1
285
Tumor
-0.1
413
Tumor
-0.1
224
Normal
-0.1
185
Tumor
-0.1
937
Tumor
-0.1
785
Tumor
-0.1
635
Tumor
-0.1
267
Tumor
-0.1
433
Tumor
-0.1
383
Tumor
-0.1
911
Tumor
-0.1
391
Tumor
-0.2
817
Tumor
-0.2
567
Tumor
-0.2
423
Tumor
-0.2
975
Tumor
-0.2
415
Tumor
-0.2
447
Tumor
-0.2
487
Tumor
-0.2
916
Normal
-0.2
365
Tumor
-0.2
536
Normal
-0.2
743
Tumor
-0.2
957
Tumor
-0.2
465
Tumor
-0.2
483
Tumor
-0.2
524
Normal
-0.2
627
Tumor
-0.2
523
Tumor
-0.2
411
Tumor
-0.2
951
Tumor
-0.2
615
Tumor
-0.2
478
Normal
-0.3
477
Tumor
-0.3
863
Tumor
-0.3
311
Tumor
-0.3
131
Tumor
-0.3
641
Tumor
-0.3
492
Normal
-0.3
737
Tumor
-0.3
943
Tumor
-0.3
533
Tumor
-0.3
538
Normal
-0.3
192
Normal
-0.3
695
Tumor
-0.3
1025
Tumor
-0.3
195
Tumor
-0.3
1027
Tumor
-0.3
171
Tumor
-0.3
461
Tumor
-0.4
498
Normal
-0.4
127
Tumor
-0.4
257
Tumor
-0.4
573
Tumor
-0.4
865
Tumor
-0.4
953
Tumor
-0.4
525
Tumor
-0.4
661
Tumor
-0.4
343
Tumor
-0.4
297
Tumor
-0.4
427
Tumor
-0.4
813
Tumor
-0.4
513
Tumor
-0.4
283
Tumor
-0.4
557
Tumor
-0.5
535
Tumor
-0.5
425
Tumor
-0.5
211
Tumor
-0.5
467
Tumor
-0.5
857
Tumor
-0.5
877
Tumor
-0.5
814
Normal
-0.5
917
Tumor
-0.6
517
Tumor
-0.6
965
Tumor
-0.6
715
Tumor
-0.6
231
Tumor
-0.6
213
Tumor
-0.6
451
Tumor
-0.6
375
Tumor
-0.6
727
Tumor
-0.6
685
Tumor
-0.6
112
Tumor
-0.7
161
Tumor
-0.7
493
Tumor
-0.7
671
Tumor
-0.8
393
Tumor
-0.8
545
Tumor
-0.9
385
Tumor
-0.9
1041
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
