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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TYMP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
93.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
797.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
738.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
409.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
386.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
377.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
374.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
349.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
332.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
331.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
320.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
308.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
304.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
303.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
299.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
292.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
278.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
274.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
269.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
265.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
264.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
256.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
256.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
256.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
228.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
221.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
211.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
208.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
207.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
205.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
205.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
203.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
203.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
201.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
199.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
197.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
196.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
195.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
192.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
190.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
189.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
188.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
187.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
186.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
184.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
183.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
183.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
179.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
177.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
177.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
176.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
169.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
169.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
168.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
165.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
160.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
160.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
157.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
155.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
155.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
155.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
148.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
148.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
147.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
147.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
146.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
146.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
146.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
146.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
145.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
143.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
142.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
141.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
140.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
140.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
137.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
132.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
130.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
130.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
129.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
128.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
127.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
127.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
126.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
125.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
125.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
125.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
125.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
124.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
123.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
122.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
122.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
120.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
119.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
119.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
116.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
115.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
114.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
113.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
112.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
112.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
111.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
111.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
111.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
111.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
110.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
110.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
109.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
108.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
108.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
107.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
107.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
106.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
105.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
105.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
104.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
104.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
103.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
102.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
101.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
100.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
100.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
99.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
99.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
97.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
97.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
96.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
94.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
94.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
93.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
91.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
90.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
89.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
89.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
89.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
89.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
87.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
87.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
87.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
86.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
84.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
84.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
84.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
84.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
83.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
83.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
82.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
82.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
82.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
81.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
81.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
78.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
78.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
77.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
76.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
76.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
75.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
75.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
75.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
75.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
74.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
74.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
74.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
74.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
73.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
73.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
72.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
72.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
71.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
71.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
71.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
70.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
70.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
70.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
69.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
69.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
69.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
69.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
68.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
66.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
66.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
66.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
65.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
65.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
62.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
61.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
61.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
61.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
61.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
61.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
61.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
61.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
61.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
61.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
60.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
59.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
59.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
57.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
57.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
56.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
55.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
55.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
54.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
54.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
54.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
54.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
54.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
54.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
53.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
53.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
52.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
52.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
52.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
50.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
50.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
49.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
49.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
49.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
49.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
48.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
48.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
47.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
47.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
46.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
46.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
45.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
43.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
41.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
39.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
38.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TYMP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
68.9
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
379.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
369.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
362.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
336.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
271.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
271.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
227.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
213.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
190.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
179.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
165.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
161.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
158.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
155.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
149.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
143.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
142.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
141.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
140.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
139.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
139.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
136.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
134.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
134.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
134.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
132.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
132.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
128.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
126.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
126.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
124.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
120.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
115.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
114.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
113.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
113.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
113.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
109.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
107.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
107.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
106.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
106.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
105.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
105.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
104.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
104.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
103.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
102.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
101.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
100.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
99.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
99.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
98.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
96.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
96.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
92.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
92.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
92.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
91.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
91.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
90.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
90.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
88.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
87.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
87.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
87.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
86.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
84.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
84.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
82.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
81.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
81.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
81.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
80.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
80.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
80.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
79.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
79.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
78.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
75.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
74.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
74.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
73.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
72.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
72.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
71.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
70.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
70.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
69.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
68.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
66.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
66.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
65.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
64.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
64.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
64.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
64.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
64.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
62.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
62.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
62.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
61.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
61.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
61.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
61.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
60.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
60.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
60.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
60.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
58.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
58.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
57.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
55.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
54.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
54.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
51.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
51.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
51.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
51.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
51.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
50.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
49.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
42.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.3
627
Tumor
1.0
395
Tumor
1.0
223
Tumor
0.9
327
Tumor
0.9
777
Tumor
0.8
557
Tumor
0.8
857
Tumor
0.8
262
Normal
0.8
434
Normal
0.7
188
Normal
0.7
145
Tumor
0.7
913
Tumor
0.7
515
Tumor
0.6
213
Tumor
0.6
113
Tumor
0.6
685
Tumor
0.6
455
Tumor
0.6
955
Tumor
0.6
195
Tumor
0.6
187
Tumor
0.6
525
Tumor
0.6
661
Tumor
0.6
465
Tumor
0.6
217
Tumor
0.5
1043
Tumor
0.5
978
Normal
0.5
141
Tumor
0.5
884
Normal
0.5
393
Tumor
0.5
966
Normal
0.5
361
Tumor
0.5
126
Normal
0.4
383
Tumor
0.4
451
Tumor
0.4
416
Normal
0.4
357
Tumor
0.4
211
Tumor
0.4
386
Normal
0.4
914
Normal
0.4
268
Normal
0.4
343
Tumor
0.4
414
Normal
0.4
433
Tumor
0.4
114
Normal
0.4
191
Tumor
0.4
452
Normal
0.4
628
Normal
0.4
823
Tumor
0.4
421
Tumor
0.4
873
Tumor
0.3
362
Normal
0.3
344
Normal
0.3
218
Normal
0.3
396
Normal
0.3
423
Tumor
0.3
921
Tumor
0.3
432
Normal
0.3
721
Tumor
0.3
861
Tumor
0.3
286
Normal
0.3
666
Normal
0.3
353
Tumor
0.3
536
Normal
0.3
272
Normal
0.3
697
Tumor
0.3
571
Tumor
0.3
358
Normal
0.3
477
Tumor
0.3
662
Normal
0.3
778
Normal
0.3
443
Tumor
0.3
883
Tumor
0.3
124
Normal
0.2
444
Normal
0.2
312
Normal
0.2
172
Normal
0.2
814
Normal
0.2
727
Tumor
0.2
146
Normal
0.2
385
Tumor
0.2
136
Normal
0.2
368
Normal
0.2
513
Tumor
0.2
258
Normal
0.2
138
Normal
0.2
1028
Normal
0.2
1015
Tumor
0.2
786
Normal
0.2
713
Tumor
0.2
533
Tumor
0.2
162
Normal
0.2
111
Normal
0.2
422
Normal
0.2
858
Normal
0.2
392
Normal
0.2
394
Normal
0.2
137
Tumor
0.2
724
Normal
0.2
424
Normal
0.2
1044
Normal
0.2
384
Normal
0.2
366
Normal
0.2
185
Tumor
0.2
461
Tumor
0.2
916
Normal
0.2
446
Normal
0.2
456
Normal
0.2
375
Tumor
0.1
1021
Tumor
0.1
214
Normal
0.1
937
Tumor
0.1
278
Normal
0.1
498
Normal
0.1
314
Normal
0.1
558
Normal
0.1
514
Normal
0.1
462
Normal
0.1
874
Normal
0.1
574
Normal
0.1
192
Normal
0.1
528
Normal
0.1
956
Normal
0.1
222
Normal
0.1
926
Normal
0.1
332
Normal
0.1
524
Normal
0.1
851
Tumor
0.1
376
Normal
0.1
952
Normal
0.1
277
Tumor
0.1
228
Normal
0.1
328
Normal
0.1
538
Normal
0.1
664
Normal
0.1
635
Tumor
0.1
284
Normal
0.1
868
Normal
0.1
283
Tumor
0.1
954
Normal
0.1
867
Tumor
0.1
492
Normal
0.1
563
Tumor
0.1
977
Tumor
0.0
447
Tumor
0.0
224
Normal
0.0
365
Tumor
0.0
388
Normal
0.0
824
Normal
0.0
648
Normal
0.0
518
Normal
0.0
917
Tumor
0.0
132
Normal
0.0
686
Normal
0.0
816
Normal
0.0
428
Normal
0.0
953
Tumor
0.0
756
Normal
0.0
464
Normal
0.0
212
Normal
0.0
148
Normal
0.0
257
Tumor
0.0
142
Normal
0.0
526
Normal
0.0
746
Normal
0.0
984
Normal
0.0
467
Tumor
0.0
1016
Normal
0.0
728
Normal
0.0
427
Tumor
0.0
196
Normal
0.0
564
Normal
0.0
813
Tumor
0.0
1031
Tumor
0.0
1046
Normal
0.0
642
Normal
-0.1
391
Tumor
-0.1
482
Normal
-0.1
982
Normal
-0.1
356
Normal
-0.1
968
Normal
-0.1
415
Tumor
-0.1
352
Normal
-0.1
128
Normal
-0.1
478
Normal
-0.1
436
Normal
-0.1
716
Normal
-0.1
535
Tumor
-0.1
298
Normal
-0.1
912
Normal
-0.1
964
Normal
-0.1
738
Normal
-0.1
516
Normal
-0.1
1014
Normal
-0.1
755
Tumor
-0.1
527
Tumor
-0.1
618
Normal
-0.1
426
Normal
-0.1
474
Normal
-0.1
448
Normal
-0.1
976
Normal
-0.1
232
Normal
-0.1
866
Normal
-0.1
918
Normal
-0.1
1045
Tumor
-0.1
922
Normal
-0.1
354
Normal
-0.1
616
Normal
-0.1
742
Normal
-0.1
487
Tumor
-0.1
1025
Tumor
-0.1
647
Tumor
-0.1
696
Normal
-0.1
573
Tumor
-0.1
568
Normal
-0.1
466
Normal
-0.2
882
Normal
-0.2
852
Normal
-0.2
817
Tumor
-0.2
468
Normal
-0.2
472
Normal
-0.2
663
Tumor
-0.2
412
Normal
-0.2
878
Normal
-0.2
672
Normal
-0.2
862
Normal
-0.2
297
Tumor
-0.2
723
Tumor
-0.2
636
Normal
-0.2
425
Tumor
-0.2
1026
Normal
-0.2
364
Normal
-0.2
186
Normal
-0.2
135
Tumor
-0.2
714
Normal
-0.2
445
Tumor
-0.2
864
Normal
-0.2
523
Tumor
-0.2
1022
Normal
-0.2
572
Normal
-0.2
722
Normal
-0.2
534
Normal
-0.2
341
Tumor
-0.2
342
Normal
-0.3
411
Tumor
-0.3
944
Normal
-0.3
818
Normal
-0.3
975
Tumor
-0.3
491
Tumor
-0.3
1042
Normal
-0.3
881
Tumor
-0.3
951
Tumor
-0.3
744
Normal
-0.3
915
Tumor
-0.3
1032
Normal
-0.3
943
Tumor
-0.3
493
Tumor
-0.3
737
Tumor
-0.3
938
Normal
-0.3
161
Tumor
-0.4
981
Tumor
-0.4
494
Normal
-0.4
963
Tumor
-0.4
484
Normal
-0.4
413
Tumor
-0.4
431
Tumor
-0.4
481
Tumor
-0.4
698
Normal
-0.4
125
Tumor
-0.4
554
Normal
-0.4
958
Normal
-0.4
112
Tumor
-0.4
785
Tumor
-0.4
387
Tumor
-0.4
1027
Tumor
-0.4
231
Tumor
-0.4
367
Tumor
-0.4
924
Normal
-0.5
546
Normal
-0.5
815
Tumor
-0.5
355
Tumor
-0.5
267
Tumor
-0.5
615
Tumor
-0.5
488
Normal
-0.5
261
Tumor
-0.5
745
Tumor
-0.5
463
Tumor
-0.5
695
Tumor
-0.5
171
Tumor
-0.5
665
Tumor
-0.6
617
Tumor
-0.6
671
Tumor
-0.6
271
Tumor
-0.6
147
Tumor
-0.6
331
Tumor
-0.6
865
Tumor
-0.6
483
Tumor
-0.7
741
Tumor
-0.7
123
Tumor
-0.7
911
Tumor
-0.7
435
Tumor
-0.7
863
Tumor
-0.7
925
Tumor
-0.7
497
Tumor
-0.7
641
Tumor
-0.8
957
Tumor
-0.8
221
Tumor
-0.8
127
Tumor
-0.8
567
Tumor
-0.8
983
Tumor
-0.8
227
Tumor
-0.8
877
Tumor
-0.8
967
Tumor
-0.9
715
Tumor
-0.9
1041
Tumor
-0.9
923
Tumor
-0.9
313
Tumor
-1.0
545
Tumor
-1.0
363
Tumor
-1.0
285
Tumor
-1.0
1013
Tumor
-1.0
351
Tumor
-1.1
537
Tumor
-1.1
471
Tumor
-1.1
553
Tumor
-1.1
517
Tumor
-1.1
473
Tumor
-1.1
131
Tumor
-1.3
965
Tumor
-1.5
743
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
