We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAGD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
57.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
55.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAGD is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
37.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
1.5
851
Tumor
1.4
125
Tumor
1.2
313
Tumor
1.2
957
Tumor
1.0
147
Tumor
1.0
953
Tumor
1.0
573
Tumor
1.0
257
Tumor
1.0
537
Tumor
1.0
283
Tumor
0.9
1027
Tumor
0.9
745
Tumor
0.8
375
Tumor
0.7
395
Tumor
0.6
1025
Tumor
0.6
525
Tumor
0.5
387
Tumor
0.5
355
Tumor
0.5
425
Tumor
0.5
557
Tumor
0.4
421
Tumor
0.4
571
Tumor
0.4
343
Tumor
0.4
951
Tumor
0.3
533
Tumor
0.3
943
Tumor
0.3
923
Tumor
0.3
451
Tumor
0.3
1041
Tumor
0.3
925
Tumor
0.3
513
Tumor
0.3
965
Tumor
0.3
713
Tumor
0.3
867
Tumor
0.2
615
Tumor
0.2
231
Tumor
0.2
185
Tumor
0.2
741
Tumor
0.2
483
Tumor
0.2
443
Tumor
0.2
413
Tumor
0.2
647
Tumor
0.2
567
Tumor
0.2
663
Tumor
0.2
427
Tumor
0.2
1045
Tumor
0.2
823
Tumor
0.2
478
Normal
0.2
311
Tumor
0.2
641
Tumor
0.2
224
Normal
0.2
921
Tumor
0.1
984
Normal
0.1
385
Tumor
0.1
493
Tumor
0.1
724
Normal
0.1
563
Tumor
0.1
223
Tumor
0.1
661
Tumor
0.1
492
Normal
0.1
172
Normal
0.1
746
Normal
0.1
135
Tumor
0.1
221
Tumor
0.1
123
Tumor
0.1
124
Normal
0.1
434
Normal
0.1
883
Tumor
0.1
1015
Tumor
0.1
952
Normal
0.1
212
Normal
0.1
617
Tumor
0.1
865
Tumor
0.1
1014
Normal
0.1
467
Tumor
0.1
162
Normal
0.1
697
Tumor
0.1
723
Tumor
0.1
742
Normal
0.1
978
Normal
0.1
415
Tumor
0.1
911
Tumor
0.1
488
Normal
0.1
817
Tumor
0.1
384
Normal
0.1
353
Tumor
0.1
344
Normal
0.1
186
Normal
0.1
352
Normal
0.1
426
Normal
0.1
487
Tumor
0.1
627
Tumor
0.1
524
Normal
0.1
494
Normal
0.1
917
Tumor
0.1
1013
Tumor
0.1
284
Normal
0.1
517
Tumor
0.1
744
Normal
0.1
616
Normal
0.1
471
Tumor
0.1
148
Normal
0.1
341
Tumor
0.0
435
Tumor
0.0
271
Tumor
0.0
737
Tumor
0.0
686
Normal
0.0
534
Normal
0.0
444
Normal
0.0
111
Normal
0.0
423
Tumor
0.0
498
Normal
0.0
536
Normal
0.0
272
Normal
0.0
873
Tumor
0.0
738
Normal
0.0
816
Normal
0.0
716
Normal
0.0
954
Normal
0.0
937
Tumor
0.0
262
Normal
0.0
1042
Normal
0.0
211
Tumor
0.0
361
Tumor
0.0
1022
Normal
0.0
572
Normal
0.0
558
Normal
0.0
328
Normal
0.0
477
Tumor
0.0
391
Tumor
0.0
411
Tumor
0.0
1016
Normal
0.0
171
Tumor
0.0
535
Tumor
0.0
473
Tumor
0.0
553
Tumor
0.0
232
Normal
0.0
363
Tumor
0.0
528
Normal
0.0
564
Normal
-0.1
685
Tumor
-0.1
1028
Normal
-0.1
145
Tumor
-0.1
286
Normal
-0.1
695
Tumor
-0.1
778
Normal
-0.1
461
Tumor
-0.1
362
Normal
-0.1
448
Normal
-0.1
715
Tumor
-0.1
228
Normal
-0.1
861
Tumor
-0.1
277
Tumor
-0.1
824
Normal
-0.1
213
Tumor
-0.1
354
Normal
-0.1
777
Tumor
-0.1
396
Normal
-0.1
882
Normal
-0.1
815
Tumor
-0.1
474
Normal
-0.1
364
Normal
-0.1
877
Tumor
-0.1
538
Normal
-0.1
755
Tumor
-0.1
662
Normal
-0.1
142
Normal
-0.1
728
Normal
-0.1
874
Normal
-0.1
314
Normal
-0.1
1021
Tumor
-0.1
714
Normal
-0.1
1032
Normal
-0.1
866
Normal
-0.1
484
Normal
-0.1
982
Normal
-0.1
342
Normal
-0.1
497
Tumor
-0.1
357
Tumor
-0.1
721
Tumor
-0.1
365
Tumor
-0.1
963
Tumor
-0.1
376
Normal
-0.1
268
Normal
-0.1
862
Normal
-0.1
412
Normal
-0.1
516
Normal
-0.1
126
Normal
-0.1
432
Normal
-0.1
414
Normal
-0.1
261
Tumor
-0.1
642
Normal
-0.1
1026
Normal
-0.1
447
Tumor
-0.2
546
Normal
-0.2
636
Normal
-0.2
518
Normal
-0.2
966
Normal
-0.2
356
Normal
-0.2
455
Tumor
-0.2
756
Normal
-0.2
196
Normal
-0.2
514
Normal
-0.2
192
Normal
-0.2
914
Normal
-0.2
482
Normal
-0.2
574
Normal
-0.2
698
Normal
-0.2
392
Normal
-0.2
878
Normal
-0.2
188
Normal
-0.2
112
Tumor
-0.2
1044
Normal
-0.2
386
Normal
-0.2
456
Normal
-0.2
527
Tumor
-0.2
664
Normal
-0.2
436
Normal
-0.2
367
Tumor
-0.2
433
Tumor
-0.2
554
Normal
-0.2
141
Tumor
-0.2
161
Tumor
-0.2
424
Normal
-0.2
864
Normal
-0.2
222
Normal
-0.2
618
Normal
-0.2
446
Normal
-0.2
127
Tumor
-0.2
858
Normal
-0.2
394
Normal
-0.2
227
Tumor
-0.2
278
Normal
-0.2
298
Normal
-0.2
393
Tumor
-0.2
388
Normal
-0.2
696
Normal
-0.2
146
Normal
-0.2
463
Tumor
-0.2
472
Normal
-0.2
526
Normal
-0.2
672
Normal
-0.2
968
Normal
-0.2
983
Tumor
-0.2
665
Tumor
-0.2
955
Tumor
-0.2
722
Normal
-0.2
218
Normal
-0.2
977
Tumor
-0.2
462
Normal
-0.2
568
Normal
-0.2
857
Tumor
-0.2
964
Normal
-0.2
786
Normal
-0.2
195
Tumor
-0.2
332
Normal
-0.2
944
Normal
-0.2
981
Tumor
-0.2
366
Normal
-0.2
214
Normal
-0.2
368
Normal
-0.2
358
Normal
-0.3
976
Normal
-0.3
813
Tumor
-0.3
431
Tumor
-0.3
128
Normal
-0.3
114
Normal
-0.3
464
Normal
-0.3
868
Normal
-0.3
327
Tumor
-0.3
312
Normal
-0.3
545
Tumor
-0.3
1031
Tumor
-0.3
956
Normal
-0.3
422
Normal
-0.3
187
Tumor
-0.3
924
Normal
-0.3
648
Normal
-0.3
481
Tumor
-0.3
958
Normal
-0.3
881
Tumor
-0.3
814
Normal
-0.3
267
Tumor
-0.3
785
Tumor
-0.3
466
Normal
-0.3
916
Normal
-0.3
258
Normal
-0.3
938
Normal
-0.3
666
Normal
-0.3
975
Tumor
-0.3
628
Normal
-0.3
915
Tumor
-0.3
416
Normal
-0.3
967
Tumor
-0.3
818
Normal
-0.3
113
Tumor
-0.3
428
Normal
-0.3
136
Normal
-0.3
1043
Tumor
-0.3
217
Tumor
-0.3
1046
Normal
-0.3
743
Tumor
-0.3
468
Normal
-0.3
137
Tumor
-0.3
445
Tumor
-0.4
131
Tumor
-0.4
852
Normal
-0.4
383
Tumor
-0.4
912
Normal
-0.4
863
Tumor
-0.4
132
Normal
-0.4
913
Tumor
-0.4
297
Tumor
-0.4
452
Normal
-0.4
884
Normal
-0.4
191
Tumor
-0.5
918
Normal
-0.5
515
Tumor
-0.5
351
Tumor
-0.5
671
Tumor
-0.5
138
Normal
-0.5
922
Normal
-0.5
926
Normal
-0.5
331
Tumor
-0.5
523
Tumor
-0.6
635
Tumor
-0.6
285
Tumor
-0.6
727
Tumor
-0.6
465
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
