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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EHD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
119.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
90.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
89.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
36.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EHD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
71.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
54.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
1.3
354
Normal
0.9
444
Normal
0.8
146
Normal
0.8
672
Normal
0.8
744
Normal
0.8
572
Normal
0.7
384
Normal
0.7
311
Tumor
0.7
816
Normal
0.7
878
Normal
0.6
818
Normal
0.6
126
Normal
0.6
421
Tumor
0.6
344
Normal
0.6
984
Normal
0.6
866
Normal
0.6
498
Normal
0.6
1032
Normal
0.6
352
Normal
0.5
386
Normal
0.5
982
Normal
0.5
874
Normal
0.5
368
Normal
0.5
958
Normal
0.5
536
Normal
0.5
976
Normal
0.5
342
Normal
0.4
1044
Normal
0.4
363
Tumor
0.4
124
Normal
0.4
464
Normal
0.4
916
Normal
0.4
312
Normal
0.4
778
Normal
0.4
715
Tumor
0.4
446
Normal
0.4
224
Normal
0.4
786
Normal
0.4
185
Tumor
0.4
268
Normal
0.4
968
Normal
0.4
546
Normal
0.4
823
Tumor
0.4
884
Normal
0.4
716
Normal
0.4
538
Normal
0.4
392
Normal
0.4
952
Normal
0.4
554
Normal
0.4
448
Normal
0.4
468
Normal
0.3
314
Normal
0.3
574
Normal
0.3
424
Normal
0.3
396
Normal
0.3
466
Normal
0.3
111
Normal
0.3
394
Normal
0.3
376
Normal
0.3
298
Normal
0.3
148
Normal
0.3
434
Normal
0.3
478
Normal
0.3
218
Normal
0.3
432
Normal
0.3
618
Normal
0.3
558
Normal
0.3
636
Normal
0.3
472
Normal
0.3
954
Normal
0.3
212
Normal
0.3
1014
Normal
0.3
272
Normal
0.3
162
Normal
0.3
981
Tumor
0.3
196
Normal
0.3
188
Normal
0.3
142
Normal
0.3
824
Normal
0.3
528
Normal
0.3
136
Normal
0.3
852
Normal
0.3
628
Normal
0.3
214
Normal
0.3
516
Normal
0.3
882
Normal
0.3
1028
Normal
0.3
666
Normal
0.3
364
Normal
0.3
474
Normal
0.3
938
Normal
0.3
128
Normal
0.3
283
Tumor
0.3
412
Normal
0.3
723
Tumor
0.3
738
Normal
0.3
231
Tumor
0.3
388
Normal
0.3
284
Normal
0.2
138
Normal
0.2
514
Normal
0.2
914
Normal
0.2
924
Normal
0.2
922
Normal
0.2
563
Tumor
0.2
223
Tumor
0.2
686
Normal
0.2
132
Normal
0.2
746
Normal
0.2
141
Tumor
0.2
814
Normal
0.2
1022
Normal
0.2
297
Tumor
0.2
713
Tumor
0.2
642
Normal
0.2
664
Normal
0.2
278
Normal
0.2
524
Normal
0.2
482
Normal
0.2
488
Normal
0.2
956
Normal
0.2
662
Normal
0.2
414
Normal
0.2
113
Tumor
0.2
627
Tumor
0.2
422
Normal
0.2
428
Normal
0.2
742
Normal
0.2
362
Normal
0.2
648
Normal
0.2
436
Normal
0.2
383
Tumor
0.2
232
Normal
0.2
366
Normal
0.2
356
Normal
0.2
343
Tumor
0.2
492
Normal
0.1
187
Tumor
0.1
918
Normal
0.1
327
Tumor
0.1
262
Normal
0.1
1046
Normal
0.1
864
Normal
0.1
228
Normal
0.1
172
Normal
0.1
722
Normal
0.1
1026
Normal
0.1
698
Normal
0.1
195
Tumor
0.1
462
Normal
0.1
868
Normal
0.1
137
Tumor
0.1
456
Normal
0.1
484
Normal
0.1
858
Normal
0.1
714
Normal
0.1
114
Normal
0.1
964
Normal
0.1
426
Normal
0.1
191
Tumor
0.1
944
Normal
0.1
416
Normal
0.1
1045
Tumor
0.1
728
Normal
0.1
358
Normal
0.1
912
Normal
0.1
641
Tumor
0.1
616
Normal
0.1
513
Tumor
0.1
411
Tumor
0.1
978
Normal
0.1
222
Normal
0.1
494
Normal
0.0
467
Tumor
0.0
186
Normal
0.0
813
Tumor
0.0
568
Normal
0.0
286
Normal
0.0
1016
Normal
0.0
926
Normal
0.0
452
Normal
0.0
1015
Tumor
0.0
112
Tumor
0.0
696
Normal
0.0
917
Tumor
0.0
526
Normal
0.0
647
Tumor
0.0
862
Normal
0.0
518
Normal
0.0
534
Normal
0.0
615
Tumor
0.0
395
Tumor
0.0
261
Tumor
0.0
332
Normal
0.0
671
Tumor
0.0
213
Tumor
0.0
415
Tumor
0.0
258
Normal
0.0
727
Tumor
0.0
756
Normal
0.0
915
Tumor
0.0
881
Tumor
0.0
963
Tumor
0.0
161
Tumor
0.0
1042
Normal
0.0
217
Tumor
0.0
145
Tumor
0.0
461
Tumor
-0.1
1041
Tumor
-0.1
353
Tumor
-0.1
431
Tumor
-0.1
227
Tumor
-0.1
557
Tumor
-0.1
975
Tumor
-0.1
863
Tumor
-0.1
564
Normal
-0.1
328
Normal
-0.1
721
Tumor
-0.1
923
Tumor
-0.1
465
Tumor
-0.1
423
Tumor
-0.1
127
Tumor
-0.1
341
Tumor
-0.2
817
Tumor
-0.2
517
Tumor
-0.2
171
Tumor
-0.2
447
Tumor
-0.2
221
Tumor
-0.2
355
Tumor
-0.2
977
Tumor
-0.2
741
Tumor
-0.2
365
Tumor
-0.2
785
Tumor
-0.2
553
Tumor
-0.2
483
Tumor
-0.2
943
Tumor
-0.2
471
Tumor
-0.2
665
Tumor
-0.2
695
Tumor
-0.2
857
Tumor
-0.2
433
Tumor
-0.2
571
Tumor
-0.2
883
Tumor
-0.3
367
Tumor
-0.3
277
Tumor
-0.3
777
Tumor
-0.3
545
Tumor
-0.3
455
Tumor
-0.3
724
Normal
-0.3
635
Tumor
-0.3
491
Tumor
-0.3
361
Tumor
-0.3
685
Tumor
-0.3
966
Normal
-0.3
257
Tumor
-0.3
913
Tumor
-0.3
937
Tumor
-0.3
375
Tumor
-0.4
617
Tumor
-0.4
955
Tumor
-0.4
867
Tumor
-0.4
135
Tumor
-0.4
435
Tumor
-0.4
755
Tumor
-0.4
493
Tumor
-0.4
911
Tumor
-0.4
921
Tumor
-0.4
745
Tumor
-0.4
123
Tumor
-0.4
1027
Tumor
-0.4
147
Tumor
-0.4
463
Tumor
-0.4
525
Tumor
-0.4
481
Tumor
-0.4
1031
Tumor
-0.4
965
Tumor
-0.4
451
Tumor
-0.5
697
Tumor
-0.5
473
Tumor
-0.5
427
Tumor
-0.5
425
Tumor
-0.5
385
Tumor
-0.5
477
Tumor
-0.5
445
Tumor
-0.5
413
Tumor
-0.5
1025
Tumor
-0.5
861
Tumor
-0.5
925
Tumor
-0.5
877
Tumor
-0.5
387
Tumor
-0.5
391
Tumor
-0.5
515
Tumor
-0.5
967
Tumor
-0.6
331
Tumor
-0.6
313
Tumor
-0.6
535
Tumor
-0.6
1043
Tumor
-0.6
957
Tumor
-0.6
743
Tumor
-0.6
953
Tumor
-0.6
443
Tumor
-0.6
851
Tumor
-0.6
393
Tumor
-0.6
211
Tumor
-0.6
1013
Tumor
-0.6
125
Tumor
-0.6
487
Tumor
-0.7
357
Tumor
-0.7
271
Tumor
-0.7
567
Tumor
-0.7
267
Tumor
-0.7
527
Tumor
-0.8
573
Tumor
-0.8
873
Tumor
-0.8
1021
Tumor
-0.8
983
Tumor
-0.9
523
Tumor
-0.9
737
Tumor
-0.9
533
Tumor
-0.9
537
Tumor
-1.0
663
Tumor
-1.0
497
Tumor
-1.0
661
Tumor
-1.0
815
Tumor
-1.0
285
Tumor
-1.1
951
Tumor
-1.1
131
Tumor
-1.2
865
Tumor
-1.2
351
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
