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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
0.6
695
Tumor
0.5
367
Tumor
0.5
127
Tumor
0.5
131
Tumor
0.5
743
Tumor
0.5
1025
Tumor
0.5
745
Tumor
0.5
425
Tumor
0.4
715
Tumor
0.4
227
Tumor
0.4
553
Tumor
0.4
545
Tumor
0.4
343
Tumor
0.4
965
Tumor
0.4
285
Tumor
0.4
823
Tumor
0.4
112
Tumor
0.4
663
Tumor
0.4
1043
Tumor
0.4
1041
Tumor
0.3
517
Tumor
0.3
445
Tumor
0.3
685
Tumor
0.3
815
Tumor
0.3
861
Tumor
0.3
957
Tumor
0.3
341
Tumor
0.3
497
Tumor
0.3
862
Normal
0.3
952
Normal
0.2
671
Tumor
0.2
554
Normal
0.2
471
Tumor
0.2
964
Normal
0.2
298
Normal
0.2
742
Normal
0.2
882
Normal
0.2
756
Normal
0.2
456
Normal
0.2
966
Normal
0.2
363
Tumor
0.2
473
Tumor
0.2
448
Normal
0.2
1031
Tumor
0.2
917
Tumor
0.2
746
Normal
0.2
257
Tumor
0.2
432
Normal
0.2
914
Normal
0.2
744
Normal
0.2
493
Tumor
0.2
538
Normal
0.2
878
Normal
0.2
967
Tumor
0.2
741
Tumor
0.2
446
Normal
0.2
617
Tumor
0.2
778
Normal
0.2
196
Normal
0.2
723
Tumor
0.2
865
Tumor
0.2
661
Tumor
0.2
716
Normal
0.2
1026
Normal
0.2
618
Normal
0.2
714
Normal
0.2
546
Normal
0.2
484
Normal
0.2
537
Tumor
0.1
436
Normal
0.1
636
Normal
0.1
1022
Normal
0.1
628
Normal
0.1
465
Tumor
0.1
228
Normal
0.1
412
Normal
0.1
686
Normal
0.1
696
Normal
0.1
452
Normal
0.1
262
Normal
0.1
877
Tumor
0.1
912
Normal
0.1
523
Tumor
0.1
858
Normal
0.1
411
Tumor
0.1
222
Normal
0.1
426
Normal
0.1
1046
Normal
0.1
314
Normal
0.1
488
Normal
0.1
468
Normal
0.1
867
Tumor
0.1
342
Normal
0.1
722
Normal
0.1
983
Tumor
0.1
518
Normal
0.1
866
Normal
0.1
351
Tumor
0.1
376
Normal
0.1
925
Tumor
0.1
573
Tumor
0.1
286
Normal
0.1
332
Normal
0.1
267
Tumor
0.1
738
Normal
0.1
466
Normal
0.1
271
Tumor
0.1
146
Normal
0.1
568
Normal
0.1
443
Tumor
0.1
358
Normal
0.1
272
Normal
0.1
467
Tumor
0.1
142
Normal
0.1
938
Normal
0.1
218
Normal
0.1
642
Normal
0.1
433
Tumor
0.1
284
Normal
0.1
616
Normal
0.1
777
Tumor
0.1
366
Normal
0.1
186
Normal
0.1
977
Tumor
0.1
515
Tumor
0.1
422
Normal
0.1
864
Normal
0.1
278
Normal
0.1
641
Tumor
0.1
1044
Normal
0.1
951
Tumor
0.1
128
Normal
0.1
976
Normal
0.1
816
Normal
0.1
462
Normal
0.1
884
Normal
0.1
666
Normal
0.1
362
Normal
0.1
698
Normal
0.1
356
Normal
0.1
982
Normal
0.1
516
Normal
0.1
728
Normal
0.1
924
Normal
0.1
364
Normal
0.1
1015
Tumor
0.1
737
Tumor
0.1
224
Normal
0.1
344
Normal
0.1
191
Tumor
0.1
944
Normal
0.1
958
Normal
0.1
1014
Normal
0.1
528
Normal
0.1
472
Normal
0.1
824
Normal
0.1
423
Tumor
0.1
818
Normal
0.1
132
Normal
0.0
312
Normal
0.0
232
Normal
0.0
492
Normal
0.0
1027
Tumor
0.0
258
Normal
0.0
231
Tumor
0.0
956
Normal
0.0
434
Normal
0.0
786
Normal
0.0
534
Normal
0.0
524
Normal
0.0
937
Tumor
0.0
954
Normal
0.0
724
Normal
0.0
975
Tumor
0.0
136
Normal
0.0
852
Normal
0.0
172
Normal
0.0
664
Normal
0.0
428
Normal
0.0
526
Normal
0.0
574
Normal
0.0
126
Normal
0.0
385
Tumor
0.0
873
Tumor
0.0
874
Normal
0.0
223
Tumor
0.0
572
Normal
0.0
648
Normal
0.0
662
Normal
0.0
1028
Normal
0.0
464
Normal
0.0
211
Tumor
0.0
494
Normal
0.0
214
Normal
0.0
557
Tumor
0.0
221
Tumor
0.0
212
Normal
0.0
922
Normal
0.0
817
Tumor
0.0
162
Normal
0.0
463
Tumor
0.0
414
Normal
0.0
424
Normal
0.0
138
Normal
0.0
352
Normal
0.0
564
Normal
0.0
558
Normal
0.0
482
Normal
0.0
491
Tumor
0.0
926
Normal
0.0
384
Normal
0.0
514
Normal
0.0
923
Tumor
0.0
665
Tumor
0.0
213
Tumor
0.0
478
Normal
0.0
148
Normal
0.0
444
Normal
0.0
111
Normal
0.0
635
Tumor
0.0
415
Tumor
0.0
416
Normal
0.0
918
Normal
0.0
354
Normal
0.0
283
Tumor
0.0
331
Tumor
0.0
188
Normal
0.0
141
Tumor
0.0
328
Normal
0.0
268
Normal
0.0
968
Normal
0.0
1016
Normal
0.0
981
Tumor
0.0
1032
Normal
0.0
396
Normal
0.0
498
Normal
0.0
713
Tumor
0.0
114
Normal
0.0
984
Normal
0.0
413
Tumor
0.0
474
Normal
0.0
124
Normal
0.0
881
Tumor
0.0
261
Tumor
0.0
535
Tumor
0.0
672
Normal
0.0
563
Tumor
0.0
435
Tumor
0.0
447
Tumor
-0.1
477
Tumor
-0.1
916
Normal
-0.1
915
Tumor
-0.1
353
Tumor
-0.1
113
Tumor
-0.1
921
Tumor
-0.1
868
Normal
-0.1
883
Tumor
-0.1
145
Tumor
-0.1
1045
Tumor
-0.1
461
Tumor
-0.1
785
Tumor
-0.1
391
Tumor
-0.1
365
Tumor
-0.1
361
Tumor
-0.1
394
Normal
-0.1
536
Normal
-0.1
851
Tumor
-0.1
327
Tumor
-0.1
421
Tumor
-0.1
431
Tumor
-0.1
217
Tumor
-0.1
857
Tumor
-0.1
392
Normal
-0.1
913
Tumor
-0.1
192
Normal
-0.1
388
Normal
-0.1
813
Tumor
-0.1
427
Tumor
-0.1
525
Tumor
-0.1
963
Tumor
-0.1
567
Tumor
-0.1
697
Tumor
-0.1
185
Tumor
-0.1
953
Tumor
-0.1
375
Tumor
-0.1
1042
Normal
-0.1
721
Tumor
-0.1
943
Tumor
-0.1
135
Tumor
-0.1
368
Normal
-0.1
814
Normal
-0.1
125
Tumor
-0.1
355
Tumor
-0.1
1013
Tumor
-0.1
647
Tumor
-0.2
755
Tumor
-0.2
483
Tumor
-0.2
571
Tumor
-0.2
978
Normal
-0.2
386
Normal
-0.2
451
Tumor
-0.2
147
Tumor
-0.2
195
Tumor
-0.2
187
Tumor
-0.2
123
Tumor
-0.2
727
Tumor
-0.2
297
Tumor
-0.2
393
Tumor
-0.2
527
Tumor
-0.2
277
Tumor
-0.2
955
Tumor
-0.2
911
Tumor
-0.2
487
Tumor
-0.2
313
Tumor
-0.2
357
Tumor
-0.2
455
Tumor
-0.3
137
Tumor
-0.3
311
Tumor
-0.3
615
Tumor
-0.3
171
Tumor
-0.3
383
Tumor
-0.3
863
Tumor
-0.3
395
Tumor
-0.4
627
Tumor
-0.4
481
Tumor
-0.4
161
Tumor
-0.4
387
Tumor
-0.4
1021
Tumor
-0.4
513
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
