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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
47.4
nTPM
HPA Brain:
92.2
nTPM
GTEx:
47.4
nTPM
FANTOM5:
399.8
Scaled Tags Per Million
Pig:
94.4
nTPM
Mouse:
107.1
nTPM
Allen mouse:
6.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA027320
Antibody HPA055557
Glial cells
Low
Not detected
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 74.1
1898
Male, age 80, left hemisphere
99.6
2529
Female, age 94, left hemisphere
72.9
1855
Male, age 76, left hemisphere
72.3
2621
Female, age 67, right hemisphere
70.0
1911
Female, age 85, right hemisphere
65.1
2148
Female, age 91, left hemisphere
64.8
Dentate gyrus nTPM: 75.1
2010
Male, age 76, both hemispheres
99.5
1927
Female, age 91, both hemispheres
85.4
2246
Female, age 85, both hemispheres
73.2
2530
Female, age 94, left hemisphere
70.1
2528
Male, age 74, both hemispheres
68.6
2531
Female, age 67, both hemispheres
53.6
Entorhinal gyrus nTPM: 70.7
1938
Female, age 85, left hemisphere
84.8
2764
Male, age 80, right hemisphere
77.1
1787
Male, age 76, left hemisphere
74.8
2613
Female, age 94, left hemisphere
65.5
2117
Female, age 91, right hemisphere
64.8
2686
Male, age 75, right hemisphere
57.2
Hippocampus, CA1 nTPM: 92.2
2749
Male, age 80, left hemisphere
143.4
1873
Female, age 85, both hemispheres
91.7
2045
Male, age 76, both hemispheres
86.2
2527
Male, age 74, both hemispheres
77.3
2082
Female, age 91, right hemisphere
62.6
Hippocampus, CA2 nTPM: 81.5
1892
Male, age 76, both hemispheres
114.3
1963
Male, age 80, left hemisphere
94.8
2249
Male, age 74, both hemispheres
84.5
1940
Female, age 85, left hemisphere
72.0
2437
Female, age 94, left hemisphere
62.4
2113
Female, age 91, right hemisphere
60.9
Hippocampus, CA3 nTPM: 79.3
2137
Male, age 80, left hemisphere
108.8
1867
Male, age 76, both hemispheres
106.9
2436
Male, age 74, both hemispheres
71.3
2620
Female, age 94, left hemisphere
66.2
1891
Female, age 85, both hemispheres
65.7
2861
Female, age 67, both hemispheres
57.2
Parahippocampal cortex nTPM: 73.6
1850
Male, age 80, both hemispheres
88.5
2250
Female, age 67, right hemisphere
84.3
2245
Female, age 91, both hemispheres
83.6
2018
Male, age 76, both hemispheres
76.7
1990
Female, age 91, right hemisphere
75.2
1933
Female, age 85, both hemispheres
75.1
2532
Female, age 72, left hemisphere
70.8
2693
Female, age 94, both hemispheres
63.4
2622
Female, age 67, right hemisphere
63.2
2692
Male, age 74, both hemispheres
55.3
Perirhinal gyrus nTPM: 85.5
1794
Male, age 80, right hemisphere
98.6
1847
Female, age 91, left hemisphere
91.3
1841
Female, age 85, right hemisphere
87.0
2521
Female, age 94, right hemisphere
77.4
2848
Male, age 76, right hemisphere
73.4
Subiculum nTPM: 70.3
1901
Male, age 80, both hemispheres
79.9
1977
Female, age 85, both hemispheres
78.2
2042
Male, age 76, both hemispheres
73.7
2619
Male, age 74, both hemispheres
65.3
2729
Female, age 91, right hemisphere
62.5
2438
Female, age 94, left hemisphere
61.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 47.4
Samples: 197
Max nTPM: 92.7
Min nTPM: 22.8
Std nTPM: 15.7
Median nTPM: 43.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
92.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
89.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
89.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
86.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
85.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
85.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
85.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
84.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
79.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
79.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
79.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
78.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
78.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
76.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
74.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
72.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
71.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
70.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
70.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
69.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
69.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
68.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
68.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
68.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
68.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
68.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
68.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
67.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
67.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
67.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
66.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
66.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
66.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
65.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
65.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
64.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
62.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
60.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
60.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
59.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
59.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
59.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
59.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
58.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
57.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
57.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
57.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
57.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
57.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
57.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
57.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
56.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
56.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
55.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
55.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
55.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
55.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
54.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
54.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
53.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
52.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
52.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
51.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
51.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
51.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
51.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
51.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
51.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
51.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
50.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
50.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
50.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
50.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
50.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
49.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
48.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
48.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
47.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
47.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
47.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
47.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
47.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
46.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
46.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
46.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
46.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
45.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
45.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
45.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
44.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
44.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
44.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
43.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
43.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
43.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
43.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
43.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
43.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
43.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
43.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
42.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
42.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
42.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
42.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
42.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
42.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
42.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
41.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
41.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
41.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
41.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
41.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
40.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
40.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
40.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
40.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
40.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
39.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
39.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
39.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
39.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
39.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
39.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
39.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
38.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
38.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
38.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
38.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
38.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
37.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
37.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
37.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
37.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
37.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
37.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
37.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
36.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
36.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
36.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
36.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
36.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
36.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
36.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
36.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
36.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
36.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
35.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
35.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
35.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
35.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
35.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
35.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
35.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
34.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
34.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
34.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
34.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
34.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
34.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
34.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
34.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
33.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
33.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
33.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
33.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
32.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
31.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
31.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
31.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
31.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
31.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
31.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
31.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
31.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
31.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
31.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
31.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
31.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
30.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
30.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
30.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
29.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
29.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
29.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
29.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
28.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
28.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
28.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
28.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
27.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
26.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
26.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
25.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
24.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
24.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
23.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
22.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 100.3
Samples: 4
Max nTPM: 104.0
Min nTPM: 97.5
Sample A
Male
97.5
Sample B
Male
100.5
Sample C
Female
99.0
Sample D
Female
104.0
Hippocampal formation nTPM: 107.1
Samples: 4
Max nTPM: 114.3
Min nTPM: 96.6
Sample A
Male
114.3
Sample B
Male
107.5
Sample C
Female
109.9
Sample D
Female
96.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.