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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALAS1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
147.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1008.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
770.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
710.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
592.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
579.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
572.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
561.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
546.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
495.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
480.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
472.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
470.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
456.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
454.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
446.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
433.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
431.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
417.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
403.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
396.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
390.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
376.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
369.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
368.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
364.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
363.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
361.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
360.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
360.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
360.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
351.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
344.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
343.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
340.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
327.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
327.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
322.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
320.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
309.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
308.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
304.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
303.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
303.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
301.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
298.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
287.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
285.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
284.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
279.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
278.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
274.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
273.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
271.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
270.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
262.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
262.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
258.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
249.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
247.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
242.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
240.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
237.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
235.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
235.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
228.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
228.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
228.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
226.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
225.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
225.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
223.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
220.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
218.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
216.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
216.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
214.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
214.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
205.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
204.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
201.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
200.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
193.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
190.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
184.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
183.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
182.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
182.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
182.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
181.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
180.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
179.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
179.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
176.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
175.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
173.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
170.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
168.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
166.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
164.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
163.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
160.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
160.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
159.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
158.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
158.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
158.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
157.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
156.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
156.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
156.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
156.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
155.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
154.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
154.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
153.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
151.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
151.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
150.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
149.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
147.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
147.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
147.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
147.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
146.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
146.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
146.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
146.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
145.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
143.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
142.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
141.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
140.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
140.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
138.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
136.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
134.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
133.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
132.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
132.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
131.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
131.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
131.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
131.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
130.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
129.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
129.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
128.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
127.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
126.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
125.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
124.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
124.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
124.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
123.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
123.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
122.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
121.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
119.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
118.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
118.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
118.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
118.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
117.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
117.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
116.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
115.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
115.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
113.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
113.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
112.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
111.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
110.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
106.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
106.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
105.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
104.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
103.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
102.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
102.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
102.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
101.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
100.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
99.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
99.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
97.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
97.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
97.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
96.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
96.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
95.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
95.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
94.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
94.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
93.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
93.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
92.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
91.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
91.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
90.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
90.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
89.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
88.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
88.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
87.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
87.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
87.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
86.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
86.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
85.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
85.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
84.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
84.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
83.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
83.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
83.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
83.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
82.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
82.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
82.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
82.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
82.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
81.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
81.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
81.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
81.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
80.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
79.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
79.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
79.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
79.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
78.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
78.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
78.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
78.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
78.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
77.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
77.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
77.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
75.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
73.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
72.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
72.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
71.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
71.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
70.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
70.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
70.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
70.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
70.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
69.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
68.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
68.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
68.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
68.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
68.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
66.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
65.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
65.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
65.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
64.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
64.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
64.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
64.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
64.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
63.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
63.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
63.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
61.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
61.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
60.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
60.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
60.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
60.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
60.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
59.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
58.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
58.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
57.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
57.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
56.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
54.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
54.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
53.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
53.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
51.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
49.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
49.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
49.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
48.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
48.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
47.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
46.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
46.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
45.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
44.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
43.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
42.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
42.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
36.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALAS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
125.3
Number of samples
231
Samples
Sample
Description
TPM
DO48677
0 years, male, NA, stage:3, alive, 1140 days
826.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
674.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
615.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
526.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
500.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
481.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
476.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
467.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
428.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
370.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
361.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
339.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
334.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
319.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
311.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
299.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
297.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
294.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
290.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
284.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
278.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
278.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
278.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
276.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
274.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
268.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
268.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
258.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
257.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
248.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
246.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
242.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
239.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
236.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
236.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
234.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
223.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
219.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
219.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
215.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
207.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
202.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
201.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
198.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
197.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
192.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
191.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
190.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
190.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
188.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
187.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
186.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
184.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
183.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
182.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
182.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
181.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
175.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
168.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
168.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
167.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
160.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
154.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
152.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
152.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
151.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
150.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
149.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
149.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
149.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
147.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
147.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
143.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
139.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
136.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
134.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
134.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
133.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
133.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
132.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
132.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
126.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
126.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
123.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
122.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
122.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
119.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
118.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
117.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
111.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
110.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
106.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
103.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
103.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
102.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
102.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
101.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
100.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
100.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
99.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
98.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
96.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
95.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
95.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
94.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
94.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
92.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
88.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
84.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
81.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
80.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
80.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
80.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
79.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
78.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
77.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
77.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
76.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
76.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
76.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
75.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
75.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
74.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
74.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
72.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
71.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
71.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
70.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
70.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
69.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
69.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
67.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
66.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
66.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
64.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
62.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
62.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
62.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
61.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
60.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
59.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
59.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
58.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
58.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
58.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
58.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
58.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
57.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
56.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
52.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
51.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
51.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
49.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
47.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
46.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
45.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
44.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
44.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
43.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
40.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
39.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
36.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
221
Tumor
1.3
525
Tumor
1.3
921
Tumor
1.3
391
Tumor
1.2
537
Tumor
1.0
533
Tumor
0.9
327
Tumor
0.9
755
Tumor
0.9
937
Tumor
0.8
865
Tumor
0.8
911
Tumor
0.8
477
Tumor
0.8
981
Tumor
0.8
957
Tumor
0.7
951
Tumor
0.7
1041
Tumor
0.7
494
Normal
0.6
864
Normal
0.6
267
Tumor
0.6
628
Normal
0.6
481
Tumor
0.6
641
Tumor
0.6
1031
Tumor
0.6
967
Tumor
0.6
713
Tumor
0.6
428
Normal
0.6
861
Tumor
0.6
353
Tumor
0.6
715
Tumor
0.5
915
Tumor
0.5
411
Tumor
0.5
261
Tumor
0.5
636
Normal
0.5
918
Normal
0.5
191
Tumor
0.5
975
Tumor
0.5
1025
Tumor
0.5
227
Tumor
0.5
422
Normal
0.4
277
Tumor
0.4
976
Normal
0.4
1027
Tumor
0.4
727
Tumor
0.4
451
Tumor
0.4
977
Tumor
0.4
866
Normal
0.4
546
Normal
0.4
1015
Tumor
0.4
557
Tumor
0.4
742
Normal
0.4
817
Tumor
0.4
685
Tumor
0.4
484
Normal
0.4
728
Normal
0.4
482
Normal
0.4
431
Tumor
0.3
648
Normal
0.3
328
Normal
0.3
492
Normal
0.3
616
Normal
0.3
851
Tumor
0.3
741
Tumor
0.3
873
Tumor
0.3
462
Normal
0.3
982
Normal
0.3
356
Normal
0.3
513
Tumor
0.3
1014
Normal
0.3
926
Normal
0.3
364
Normal
0.3
363
Tumor
0.3
571
Tumor
0.3
354
Normal
0.3
1026
Normal
0.3
127
Tumor
0.3
635
Tumor
0.3
535
Tumor
0.3
553
Tumor
0.2
922
Normal
0.2
128
Normal
0.2
387
Tumor
0.2
483
Tumor
0.2
984
Normal
0.2
944
Normal
0.2
816
Normal
0.2
672
Normal
0.2
716
Normal
0.2
514
Normal
0.2
954
Normal
0.2
445
Tumor
0.2
361
Tumor
0.2
147
Tumor
0.2
1043
Tumor
0.2
171
Tumor
0.2
426
Normal
0.2
423
Tumor
0.2
554
Normal
0.2
914
Normal
0.2
884
Normal
0.2
1032
Normal
0.2
881
Tumor
0.2
366
Normal
0.2
665
Tumor
0.2
388
Normal
0.2
534
Normal
0.2
187
Tumor
0.2
433
Tumor
0.2
414
Normal
0.2
258
Normal
0.2
618
Normal
0.2
352
Normal
0.2
1042
Normal
0.2
452
Normal
0.2
723
Tumor
0.2
148
Normal
0.2
424
Normal
0.2
862
Normal
0.2
572
Normal
0.2
376
Normal
0.1
664
Normal
0.1
1016
Normal
0.1
474
Normal
0.1
284
Normal
0.1
968
Normal
0.1
978
Normal
0.1
393
Tumor
0.1
132
Normal
0.1
1046
Normal
0.1
448
Normal
0.1
1044
Normal
0.1
564
Normal
0.1
468
Normal
0.1
714
Normal
0.1
526
Normal
0.1
463
Tumor
0.1
1028
Normal
0.1
145
Tumor
0.1
868
Normal
0.1
465
Tumor
0.1
162
Normal
0.1
342
Normal
0.1
956
Normal
0.1
412
Normal
0.1
647
Tumor
0.1
858
Normal
0.1
518
Normal
0.1
516
Normal
0.1
286
Normal
0.1
627
Tumor
0.1
852
Normal
0.1
857
Tumor
0.1
721
Tumor
0.1
615
Tumor
0.1
867
Tumor
0.1
738
Normal
0.1
1022
Normal
0.1
491
Tumor
0.0
222
Normal
0.0
285
Tumor
0.0
196
Normal
0.0
231
Tumor
0.0
466
Normal
0.0
744
Normal
0.0
124
Normal
0.0
938
Normal
0.0
257
Tumor
0.0
662
Normal
0.0
523
Tumor
0.0
955
Tumor
0.0
126
Normal
0.0
358
Normal
0.0
878
Normal
0.0
446
Normal
0.0
824
Normal
0.0
415
Tumor
0.0
883
Tumor
0.0
952
Normal
0.0
262
Normal
0.0
912
Normal
0.0
365
Tumor
0.0
435
Tumor
0.0
471
Tumor
0.0
272
Normal
0.0
434
Normal
0.0
341
Tumor
0.0
696
Normal
0.0
1045
Tumor
0.0
228
Normal
0.0
392
Normal
0.0
427
Tumor
0.0
786
Normal
0.0
232
Normal
0.0
271
Tumor
0.0
436
Normal
0.0
217
Tumor
0.0
357
Tumor
0.0
416
Normal
-0.1
362
Normal
-0.1
332
Normal
-0.1
568
Normal
-0.1
473
Tumor
-0.1
172
Normal
-0.1
756
Normal
-0.1
268
Normal
-0.1
472
Normal
-0.1
965
Tumor
-0.1
312
Normal
-0.1
443
Tumor
-0.1
882
Normal
-0.1
698
Normal
-0.1
558
Normal
-0.1
136
Normal
-0.1
464
Normal
-0.1
642
Normal
-0.1
161
Tumor
-0.1
517
Tumor
-0.1
746
Normal
-0.1
818
Normal
-0.1
188
Normal
-0.1
666
Normal
-0.1
212
Normal
-0.1
874
Normal
-0.1
528
Normal
-0.1
314
Normal
-0.1
213
Tumor
-0.1
432
Normal
-0.1
278
Normal
-0.1
313
Tumor
-0.1
444
Normal
-0.1
142
Normal
-0.2
913
Tumor
-0.2
367
Tumor
-0.2
394
Normal
-0.2
567
Tumor
-0.2
113
Tumor
-0.2
524
Normal
-0.2
617
Tumor
-0.2
697
Tumor
-0.2
195
Tumor
-0.2
396
Normal
-0.2
456
Normal
-0.2
924
Normal
-0.2
186
Normal
-0.2
123
Tumor
-0.2
384
Normal
-0.2
958
Normal
-0.2
916
Normal
-0.2
823
Tumor
-0.2
923
Tumor
-0.2
138
Normal
-0.2
223
Tumor
-0.2
964
Normal
-0.2
214
Normal
-0.2
925
Tumor
-0.2
218
Normal
-0.2
461
Tumor
-0.2
131
Tumor
-0.2
814
Normal
-0.2
686
Normal
-0.2
785
Tumor
-0.2
722
Normal
-0.3
778
Normal
-0.3
498
Normal
-0.3
368
Normal
-0.3
467
Tumor
-0.3
777
Tumor
-0.3
111
Normal
-0.3
745
Tumor
-0.3
563
Tumor
-0.3
114
Normal
-0.3
112
Tumor
-0.3
695
Tumor
-0.3
421
Tumor
-0.3
1013
Tumor
-0.3
488
Normal
-0.3
963
Tumor
-0.3
493
Tumor
-0.3
478
Normal
-0.3
813
Tumor
-0.3
331
Tumor
-0.3
877
Tumor
-0.3
953
Tumor
-0.3
538
Normal
-0.3
344
Normal
-0.3
135
Tumor
-0.3
125
Tumor
-0.3
298
Normal
-0.4
1021
Tumor
-0.4
386
Normal
-0.4
413
Tumor
-0.4
536
Normal
-0.4
724
Normal
-0.4
983
Tumor
-0.4
497
Tumor
-0.4
966
Normal
-0.4
515
Tumor
-0.5
297
Tumor
-0.5
737
Tumor
-0.5
943
Tumor
-0.5
487
Tumor
-0.5
863
Tumor
-0.5
141
Tumor
-0.5
224
Normal
-0.5
574
Normal
-0.5
383
Tumor
-0.5
917
Tumor
-0.5
351
Tumor
-0.6
447
Tumor
-0.6
192
Normal
-0.6
455
Tumor
-0.6
527
Tumor
-0.6
573
Tumor
-0.6
146
Normal
-0.6
671
Tumor
-0.6
137
Tumor
-0.6
355
Tumor
-0.7
385
Tumor
-0.7
311
Tumor
-0.7
185
Tumor
-0.7
425
Tumor
-0.7
815
Tumor
-0.7
663
Tumor
-0.8
661
Tumor
-0.8
743
Tumor
-0.8
545
Tumor
-0.8
395
Tumor
-0.9
375
Tumor
-0.9
343
Tumor
-1.1
283
Tumor
-1.1
211
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.