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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RB1CC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RB1CC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
65.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
48.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
47.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.5
557
Tumor
1.3
851
Tumor
1.3
937
Tumor
1.2
697
Tumor
0.9
451
Tumor
0.9
367
Tumor
0.8
363
Tumor
0.8
715
Tumor
0.8
425
Tumor
0.7
965
Tumor
0.6
745
Tumor
0.6
685
Tumor
0.6
1013
Tumor
0.6
823
Tumor
0.6
493
Tumor
0.6
815
Tumor
0.6
385
Tumor
0.5
877
Tumor
0.5
573
Tumor
0.5
421
Tumor
0.5
883
Tumor
0.5
641
Tumor
0.5
415
Tumor
0.5
865
Tumor
0.4
387
Tumor
0.4
413
Tumor
0.4
473
Tumor
0.4
283
Tumor
0.4
861
Tumor
0.4
1027
Tumor
0.4
665
Tumor
0.3
343
Tumor
0.3
567
Tumor
0.3
913
Tumor
0.3
463
Tumor
0.3
944
Normal
0.3
487
Tumor
0.3
227
Tumor
0.3
724
Normal
0.3
427
Tumor
0.3
191
Tumor
0.3
145
Tumor
0.3
981
Tumor
0.3
211
Tumor
0.3
353
Tumor
0.2
482
Normal
0.2
873
Tumor
0.2
443
Tumor
0.2
435
Tumor
0.2
954
Normal
0.2
497
Tumor
0.2
494
Normal
0.2
498
Normal
0.2
384
Normal
0.2
524
Normal
0.2
471
Tumor
0.2
358
Normal
0.2
867
Tumor
0.2
533
Tumor
0.2
525
Tumor
0.2
517
Tumor
0.2
983
Tumor
0.2
686
Normal
0.2
187
Tumor
0.2
963
Tumor
0.2
492
Normal
0.2
975
Tumor
0.2
921
Tumor
0.2
224
Normal
0.1
672
Normal
0.1
135
Tumor
0.1
917
Tumor
0.1
331
Tumor
0.1
228
Normal
0.1
223
Tumor
0.1
538
Normal
0.1
666
Normal
0.1
436
Normal
0.1
957
Tumor
0.1
571
Tumor
0.1
976
Normal
0.1
185
Tumor
0.1
344
Normal
0.1
744
Normal
0.1
648
Normal
0.1
1022
Normal
0.1
131
Tumor
0.1
943
Tumor
0.1
817
Tumor
0.1
285
Tumor
0.1
868
Normal
0.1
572
Normal
0.1
1025
Tumor
0.1
713
Tumor
0.1
488
Normal
0.1
446
Normal
0.1
696
Normal
0.1
342
Normal
0.1
864
Normal
0.1
364
Normal
0.1
1021
Tumor
0.1
411
Tumor
0.1
568
Normal
0.1
452
Normal
0.1
563
Tumor
0.1
478
Normal
0.1
368
Normal
0.1
938
Normal
0.1
481
Tumor
0.1
915
Tumor
0.1
881
Tumor
0.1
432
Normal
0.1
354
Normal
0.1
743
Tumor
0.0
662
Normal
0.0
546
Normal
0.0
914
Normal
0.0
984
Normal
0.0
723
Tumor
0.0
554
Normal
0.0
852
Normal
0.0
212
Normal
0.0
558
Normal
0.0
722
Normal
0.0
467
Tumor
0.0
922
Normal
0.0
426
Normal
0.0
535
Tumor
0.0
537
Tumor
0.0
356
Normal
0.0
746
Normal
0.0
1028
Normal
0.0
484
Normal
0.0
857
Tumor
0.0
375
Tumor
0.0
858
Normal
0.0
391
Tumor
0.0
534
Normal
0.0
444
Normal
0.0
523
Tumor
0.0
284
Normal
0.0
966
Normal
0.0
728
Normal
0.0
664
Normal
0.0
862
Normal
0.0
113
Tumor
0.0
564
Normal
0.0
721
Tumor
0.0
148
Normal
0.0
813
Tumor
0.0
956
Normal
0.0
422
Normal
0.0
172
Normal
0.0
516
Normal
0.0
924
Normal
0.0
958
Normal
0.0
636
Normal
0.0
362
Normal
0.0
925
Tumor
0.0
268
Normal
0.0
472
Normal
0.0
982
Normal
0.0
574
Normal
0.0
716
Normal
0.0
553
Tumor
0.0
967
Tumor
0.0
412
Normal
0.0
527
Tumor
0.0
388
Normal
0.0
311
Tumor
0.0
277
Tumor
0.0
423
Tumor
0.0
756
Normal
0.0
536
Normal
0.0
816
Normal
0.0
392
Normal
0.0
383
Tumor
0.0
977
Tumor
0.0
878
Normal
0.0
778
Normal
0.0
328
Normal
0.0
738
Normal
0.0
742
Normal
0.0
1032
Normal
0.0
714
Normal
0.0
912
Normal
0.0
352
Normal
0.0
513
Tumor
0.0
978
Normal
-0.1
926
Normal
-0.1
112
Tumor
-0.1
186
Normal
-0.1
138
Normal
-0.1
526
Normal
-0.1
786
Normal
-0.1
448
Normal
-0.1
616
Normal
-0.1
545
Tumor
-0.1
1014
Normal
-0.1
1026
Normal
-0.1
366
Normal
-0.1
818
Normal
-0.1
916
Normal
-0.1
396
Normal
-0.1
468
Normal
-0.1
132
Normal
-0.1
142
Normal
-0.1
874
Normal
-0.1
146
Normal
-0.1
188
Normal
-0.1
232
Normal
-0.1
955
Tumor
-0.1
514
Normal
-0.1
671
Tumor
-0.1
286
Normal
-0.1
313
Tumor
-0.1
918
Normal
-0.1
125
Tumor
-0.1
196
Normal
-0.1
217
Tumor
-0.1
884
Normal
-0.1
137
Tumor
-0.1
968
Normal
-0.1
964
Normal
-0.1
261
Tumor
-0.1
923
Tumor
-0.1
1016
Normal
-0.1
882
Normal
-0.1
434
Normal
-0.1
298
Normal
-0.1
698
Normal
-0.1
192
Normal
-0.1
866
Normal
-0.1
416
Normal
-0.1
355
Tumor
-0.1
361
Tumor
-0.1
455
Tumor
-0.1
952
Normal
-0.2
1041
Tumor
-0.2
474
Normal
-0.2
161
Tumor
-0.2
221
Tumor
-0.2
483
Tumor
-0.2
393
Tumor
-0.2
824
Normal
-0.2
462
Normal
-0.2
162
Normal
-0.2
222
Normal
-0.2
312
Normal
-0.2
477
Tumor
-0.2
618
Normal
-0.2
528
Normal
-0.2
431
Tumor
-0.2
464
Normal
-0.2
327
Tumor
-0.2
911
Tumor
-0.2
737
Tumor
-0.2
218
Normal
-0.2
628
Normal
-0.2
428
Normal
-0.2
271
Tumor
-0.2
278
Normal
-0.2
1031
Tumor
-0.2
456
Normal
-0.2
394
Normal
-0.2
491
Tumor
-0.2
272
Normal
-0.2
214
Normal
-0.2
1015
Tumor
-0.2
814
Normal
-0.2
258
Normal
-0.2
395
Tumor
-0.2
141
Tumor
-0.2
332
Normal
-0.2
447
Tumor
-0.2
951
Tumor
-0.2
1043
Tumor
-0.2
195
Tumor
-0.2
127
Tumor
-0.2
414
Normal
-0.2
262
Normal
-0.2
1042
Normal
-0.2
695
Tumor
-0.2
466
Normal
-0.2
424
Normal
-0.2
376
Normal
-0.2
785
Tumor
-0.2
647
Tumor
-0.3
1045
Tumor
-0.3
136
Normal
-0.3
314
Normal
-0.3
642
Normal
-0.3
124
Normal
-0.3
617
Tumor
-0.3
741
Tumor
-0.3
126
Normal
-0.3
518
Normal
-0.3
386
Normal
-0.3
341
Tumor
-0.3
661
Tumor
-0.3
128
Normal
-0.3
1044
Normal
-0.3
365
Tumor
-0.3
147
Tumor
-0.3
213
Tumor
-0.3
1046
Normal
-0.4
433
Tumor
-0.4
663
Tumor
-0.4
111
Normal
-0.4
297
Tumor
-0.4
755
Tumor
-0.4
267
Tumor
-0.4
123
Tumor
-0.4
461
Tumor
-0.4
465
Tumor
-0.5
114
Normal
-0.5
257
Tumor
-0.5
777
Tumor
-0.5
727
Tumor
-0.5
515
Tumor
-0.5
635
Tumor
-0.5
627
Tumor
-0.5
615
Tumor
-0.6
863
Tumor
-0.7
357
Tumor
-0.7
953
Tumor
-0.7
171
Tumor
-0.7
445
Tumor
-0.9
351
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.