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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
60.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.1
Number of samples
231
Samples
Sample
Description
TPM
DO45096
0 years, male, NA, stage:2, dead, 1290 days
76.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
75.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
74.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
55.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
52.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
49.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
49.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
42.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
41.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
0.7
132
Normal
0.6
914
Normal
0.6
388
Normal
0.6
356
Normal
0.6
466
Normal
0.6
713
Tumor
0.6
636
Normal
0.5
327
Tumor
0.5
278
Normal
0.5
648
Normal
0.5
728
Normal
0.5
514
Normal
0.5
722
Normal
0.5
944
Normal
0.5
1028
Normal
0.5
162
Normal
0.5
642
Normal
0.5
314
Normal
0.5
864
Normal
0.5
756
Normal
0.5
426
Normal
0.5
1046
Normal
0.5
742
Normal
0.5
1041
Tumor
0.5
258
Normal
0.5
528
Normal
0.5
114
Normal
0.5
358
Normal
0.5
214
Normal
0.5
878
Normal
0.5
1022
Normal
0.4
396
Normal
0.4
446
Normal
0.4
738
Normal
0.4
448
Normal
0.4
564
Normal
0.4
484
Normal
0.4
232
Normal
0.4
464
Normal
0.4
328
Normal
0.4
922
Normal
0.4
1032
Normal
0.4
698
Normal
0.4
866
Normal
0.4
148
Normal
0.4
1043
Tumor
0.4
394
Normal
0.4
628
Normal
0.4
196
Normal
0.4
366
Normal
0.4
714
Normal
0.4
376
Normal
0.4
666
Normal
0.4
518
Normal
0.4
272
Normal
0.4
111
Normal
0.4
858
Normal
0.4
664
Normal
0.4
222
Normal
0.4
136
Normal
0.4
723
Tumor
0.4
526
Normal
0.4
926
Normal
0.4
212
Normal
0.4
462
Normal
0.4
451
Tumor
0.4
964
Normal
0.4
138
Normal
0.3
228
Normal
0.3
616
Normal
0.3
298
Normal
0.3
262
Normal
0.3
571
Tumor
0.3
938
Normal
0.3
172
Normal
0.3
1014
Normal
0.3
414
Normal
0.3
696
Normal
0.3
468
Normal
0.3
984
Normal
0.3
424
Normal
0.3
422
Normal
0.3
494
Normal
0.3
482
Normal
0.3
618
Normal
0.3
352
Normal
0.3
126
Normal
0.3
344
Normal
0.3
954
Normal
0.3
284
Normal
0.3
786
Normal
0.3
516
Normal
0.3
958
Normal
0.3
982
Normal
0.3
716
Normal
0.3
981
Tumor
0.3
432
Normal
0.3
456
Normal
0.3
362
Normal
0.3
312
Normal
0.3
416
Normal
0.3
286
Normal
0.3
488
Normal
0.3
342
Normal
0.3
912
Normal
0.3
364
Normal
0.3
816
Normal
0.3
824
Normal
0.3
915
Tumor
0.3
436
Normal
0.3
818
Normal
0.3
1044
Normal
0.3
568
Normal
0.3
412
Normal
0.3
778
Normal
0.3
617
Tumor
0.3
267
Tumor
0.3
452
Normal
0.3
1042
Normal
0.3
474
Normal
0.3
868
Normal
0.3
952
Normal
0.3
662
Normal
0.2
1026
Normal
0.2
127
Tumor
0.2
686
Normal
0.2
955
Tumor
0.2
572
Normal
0.2
428
Normal
0.2
746
Normal
0.2
146
Normal
0.2
546
Normal
0.2
354
Normal
0.2
918
Normal
0.2
188
Normal
0.2
968
Normal
0.2
1016
Normal
0.2
368
Normal
0.2
558
Normal
0.2
852
Normal
0.2
341
Tumor
0.2
554
Normal
0.2
956
Normal
0.2
434
Normal
0.2
142
Normal
0.2
113
Tumor
0.1
112
Tumor
0.1
911
Tumor
0.1
423
Tumor
0.1
473
Tumor
0.1
145
Tumor
0.1
916
Normal
0.1
392
Normal
0.1
231
Tumor
0.1
171
Tumor
0.1
386
Normal
0.1
862
Normal
0.1
627
Tumor
0.1
924
Normal
0.1
861
Tumor
0.1
268
Normal
0.1
444
Normal
0.1
435
Tumor
0.1
874
Normal
0.1
472
Normal
0.1
224
Normal
0.1
976
Normal
0.1
882
Normal
0.1
574
Normal
0.1
695
Tumor
0.1
978
Normal
0.1
534
Normal
0.1
218
Normal
0.1
913
Tumor
0.1
415
Tumor
0.1
524
Normal
0.1
672
Normal
0.1
124
Normal
0.0
755
Tumor
0.0
384
Normal
0.0
393
Tumor
0.0
966
Normal
0.0
867
Tumor
0.0
1021
Tumor
0.0
873
Tumor
0.0
538
Normal
0.0
615
Tumor
0.0
647
Tumor
0.0
223
Tumor
0.0
465
Tumor
0.0
721
Tumor
-0.1
186
Normal
-0.1
744
Normal
-0.1
715
Tumor
-0.1
477
Tumor
-0.1
192
Normal
-0.1
332
Normal
-0.1
963
Tumor
-0.1
498
Normal
-0.1
1015
Tumor
-0.1
478
Normal
-0.1
195
Tumor
-0.1
884
Normal
-0.1
487
Tumor
-0.1
357
Tumor
-0.1
227
Tumor
-0.1
387
Tumor
-0.1
261
Tumor
-0.2
135
Tumor
-0.2
361
Tumor
-0.2
445
Tumor
-0.2
557
Tumor
-0.2
355
Tumor
-0.2
481
Tumor
-0.2
743
Tumor
-0.2
217
Tumor
-0.2
492
Normal
-0.2
191
Tumor
-0.2
977
Tumor
-0.2
161
Tumor
-0.2
567
Tumor
-0.2
536
Normal
-0.3
697
Tumor
-0.3
741
Tumor
-0.3
257
Tumor
-0.3
497
Tumor
-0.3
427
Tumor
-0.3
943
Tumor
-0.3
923
Tumor
-0.3
663
Tumor
-0.3
1031
Tumor
-0.3
411
Tumor
-0.3
517
Tumor
-0.3
185
Tumor
-0.3
413
Tumor
-0.3
857
Tumor
-0.4
523
Tumor
-0.4
395
Tumor
-0.4
814
Normal
-0.4
351
Tumor
-0.4
537
Tumor
-0.4
141
Tumor
-0.4
447
Tumor
-0.4
493
Tumor
-0.4
483
Tumor
-0.4
443
Tumor
-0.4
353
Tumor
-0.4
635
Tumor
-0.4
433
Tumor
-0.4
573
Tumor
-0.4
367
Tumor
-0.4
527
Tumor
-0.4
525
Tumor
-0.4
1045
Tumor
-0.4
877
Tumor
-0.4
363
Tumor
-0.4
965
Tumor
-0.4
365
Tumor
-0.4
533
Tumor
-0.4
431
Tumor
-0.4
391
Tumor
-0.5
463
Tumor
-0.5
187
Tumor
-0.5
467
Tumor
-0.5
343
Tumor
-0.5
823
Tumor
-0.5
724
Normal
-0.5
313
Tumor
-0.5
953
Tumor
-0.5
213
Tumor
-0.5
147
Tumor
-0.5
271
Tumor
-0.5
863
Tumor
-0.5
491
Tumor
-0.5
917
Tumor
-0.5
515
Tumor
-0.5
785
Tumor
-0.5
665
Tumor
-0.6
967
Tumor
-0.6
881
Tumor
-0.6
817
Tumor
-0.6
937
Tumor
-0.6
461
Tumor
-0.6
1027
Tumor
-0.6
975
Tumor
-0.6
641
Tumor
-0.6
123
Tumor
-0.6
383
Tumor
-0.6
211
Tumor
-0.6
745
Tumor
-0.6
563
Tumor
-0.6
471
Tumor
-0.6
813
Tumor
-0.6
513
Tumor
-0.6
1025
Tumor
-0.7
553
Tumor
-0.7
375
Tumor
-0.7
297
Tumor
-0.7
277
Tumor
-0.7
131
Tumor
-0.7
883
Tumor
-0.7
957
Tumor
-0.7
815
Tumor
-0.7
311
Tumor
-0.7
421
Tumor
-0.7
983
Tumor
-0.7
851
Tumor
-0.8
137
Tumor
-0.8
385
Tumor
-0.8
727
Tumor
-0.8
331
Tumor
-0.8
545
Tumor
-0.8
425
Tumor
-0.8
951
Tumor
-0.8
285
Tumor
-0.8
685
Tumor
-0.8
865
Tumor
-0.8
777
Tumor
-0.8
661
Tumor
-0.9
671
Tumor
-0.9
125
Tumor
-0.9
921
Tumor
-0.9
455
Tumor
-0.9
925
Tumor
-0.9
221
Tumor
-0.9
535
Tumor
-1.0
283
Tumor
-1.0
1013
Tumor
-1.0
737
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
