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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
136.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
128.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
114.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
109.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
104.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
92.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
86.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
85.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
83.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
83.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
81.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
79.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
77.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
75.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
74.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
73.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
73.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
73.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
72.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
72.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
70.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
69.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
69.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
67.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
65.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
63.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
63.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
63.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
63.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
62.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
61.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
61.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
60.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
60.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
59.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
58.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
58.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
58.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
57.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
57.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
56.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
56.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
56.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
56.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
56.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
56.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
55.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
55.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
55.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
54.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
54.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
53.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
53.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
52.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
51.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
51.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
51.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
51.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
50.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
50.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
49.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
49.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
48.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
48.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
48.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
48.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
48.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
48.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
47.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
47.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
47.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
47.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
47.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
46.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
46.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
45.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
44.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
44.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
44.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
44.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
42.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
40.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
39.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
39.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
38.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
38.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
37.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
36.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
34.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
31.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
30.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.2
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
199.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
141.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
138.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
130.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
127.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
110.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
104.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
103.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
101.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
98.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
96.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
95.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
93.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
90.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
87.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
86.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
86.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
85.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
84.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
83.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
83.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
82.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
80.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
78.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
75.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
75.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
74.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
74.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
73.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
73.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
72.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
72.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
71.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
71.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
71.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
71.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
69.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
68.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
68.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
67.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
66.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
66.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
66.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
65.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
64.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
63.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
63.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
63.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
63.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
63.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
63.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
62.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
62.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
62.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
62.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
61.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
61.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
61.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
61.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
60.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
60.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
60.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
59.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
58.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
58.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
57.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
57.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
57.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
57.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
56.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
55.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
55.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
55.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
54.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
54.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
53.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
53.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
53.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
52.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
52.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
52.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
51.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
51.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
51.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
50.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
50.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
48.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
48.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
47.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
45.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
45.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
45.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
44.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
43.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
42.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
41.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
41.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
40.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
38.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
36.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
35.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
34.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
28.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
27.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
123
Tumor
0.6
124
Normal
0.5
171
Tumor
0.5
744
Normal
0.4
746
Normal
0.4
342
Normal
0.4
147
Tumor
0.3
461
Tumor
0.3
952
Normal
0.3
452
Normal
0.3
635
Tumor
0.3
114
Normal
0.3
755
Tumor
0.3
185
Tumor
0.3
141
Tumor
0.2
257
Tumor
0.2
715
Tumor
0.2
223
Tumor
0.2
111
Normal
0.2
344
Normal
0.2
128
Normal
0.2
977
Tumor
0.2
685
Tumor
0.2
186
Normal
0.2
366
Normal
0.2
914
Normal
0.2
451
Tumor
0.2
1021
Tumor
0.2
955
Tumor
0.2
861
Tumor
0.2
434
Normal
0.1
538
Normal
0.1
313
Tumor
0.1
138
Normal
0.1
222
Normal
0.1
368
Normal
0.1
823
Tumor
0.1
136
Normal
0.1
966
Normal
0.1
1015
Tumor
0.1
878
Normal
0.1
925
Tumor
0.1
272
Normal
0.1
125
Tumor
0.1
343
Tumor
0.1
874
Normal
0.1
1028
Normal
0.1
298
Normal
0.1
162
Normal
0.1
851
Tumor
0.0
386
Normal
0.0
436
Normal
0.0
283
Tumor
0.0
1041
Tumor
0.0
813
Tumor
0.0
217
Tumor
0.0
474
Normal
0.0
172
Normal
0.0
778
Normal
0.0
492
Normal
0.0
867
Tumor
0.0
865
Tumor
0.0
816
Normal
0.0
883
Tumor
0.0
132
Normal
0.0
545
Tumor
0.0
981
Tumor
0.0
278
Normal
0.0
515
Tumor
0.0
396
Normal
0.0
375
Tumor
0.0
188
Normal
0.0
297
Tumor
0.0
268
Normal
0.0
395
Tumor
0.0
738
Normal
0.0
661
Tumor
0.0
258
Normal
0.0
1026
Normal
0.0
557
Tumor
0.0
218
Normal
0.0
383
Tumor
0.0
312
Normal
0.0
911
Tumor
0.0
915
Tumor
0.0
146
Normal
0.0
311
Tumor
0.0
815
Tumor
0.0
426
Normal
0.0
518
Normal
0.0
464
Normal
-0.1
126
Normal
-0.1
956
Normal
-0.1
394
Normal
-0.1
554
Normal
-0.1
214
Normal
-0.1
376
Normal
-0.1
262
Normal
-0.1
365
Tumor
-0.1
553
Tumor
-0.1
412
Normal
-0.1
358
Normal
-0.1
161
Tumor
-0.1
392
Normal
-0.1
135
Tumor
-0.1
192
Normal
-0.1
137
Tumor
-0.1
228
Normal
-0.1
285
Tumor
-0.1
698
Normal
-0.1
873
Tumor
-0.1
463
Tumor
-0.1
261
Tumor
-0.1
286
Normal
-0.1
341
Tumor
-0.1
142
Normal
-0.1
388
Normal
-0.1
213
Tumor
-0.1
857
Tumor
-0.1
367
Tumor
-0.1
113
Tumor
-0.1
422
Normal
-0.1
196
Normal
-0.1
385
Tumor
-0.1
148
Normal
-0.1
573
Tumor
-0.1
741
Tumor
-0.1
393
Tumor
-0.1
817
Tumor
-0.1
332
Normal
-0.2
455
Tumor
-0.2
363
Tumor
-0.2
1016
Normal
-0.2
211
Tumor
-0.2
493
Tumor
-0.2
953
Tumor
-0.2
975
Tumor
-0.2
391
Tumor
-0.2
982
Normal
-0.2
362
Normal
-0.2
535
Tumor
-0.2
1043
Tumor
-0.2
742
Normal
-0.2
456
Normal
-0.2
443
Tumor
-0.2
465
Tumor
-0.2
232
Normal
-0.2
963
Tumor
-0.2
913
Tumor
-0.2
468
Normal
-0.2
724
Normal
-0.2
446
Normal
-0.2
421
Tumor
-0.2
314
Normal
-0.2
938
Normal
-0.2
525
Tumor
-0.2
745
Tumor
-0.2
271
Tumor
-0.3
627
Tumor
-0.3
487
Tumor
-0.3
937
Tumor
-0.3
327
Tumor
-0.3
448
Normal
-0.3
466
Normal
-0.3
785
Tumor
-0.3
462
Normal
-0.3
145
Tumor
-0.3
546
Normal
-0.3
112
Tumor
-0.3
662
Normal
-0.3
1013
Tumor
-0.3
491
Tumor
-0.3
224
Normal
-0.3
814
Normal
-0.3
527
Tumor
-0.3
881
Tumor
-0.3
1022
Normal
-0.3
498
Normal
-0.3
231
Tumor
-0.3
536
Normal
-0.3
471
Tumor
-0.3
212
Normal
-0.3
195
Tumor
-0.3
728
Normal
-0.3
483
Tumor
-0.3
427
Tumor
-0.3
917
Tumor
-0.3
924
Normal
-0.3
1042
Normal
-0.3
777
Tumor
-0.3
423
Tumor
-0.3
574
Normal
-0.3
187
Tumor
-0.3
921
Tumor
-0.3
284
Normal
-0.3
357
Tumor
-0.3
516
Normal
-0.3
424
Normal
-0.3
943
Tumor
-0.3
697
Tumor
-0.4
387
Tumor
-0.4
1025
Tumor
-0.4
976
Normal
-0.4
472
Normal
-0.4
488
Normal
-0.4
983
Tumor
-0.4
523
Tumor
-0.4
484
Normal
-0.4
868
Normal
-0.4
414
Normal
-0.4
413
Tumor
-0.4
352
Normal
-0.4
494
Normal
-0.4
513
Tumor
-0.4
1031
Tumor
-0.4
432
Normal
-0.4
428
Normal
-0.4
951
Tumor
-0.4
277
Tumor
-0.4
721
Tumor
-0.4
537
Tumor
-0.4
866
Normal
-0.4
786
Normal
-0.4
944
Normal
-0.4
411
Tumor
-0.4
877
Tumor
-0.4
567
Tumor
-0.4
444
Normal
-0.4
416
Normal
-0.4
642
Normal
-0.4
618
Normal
-0.4
1014
Normal
-0.4
227
Tumor
-0.4
445
Tumor
-0.4
824
Normal
-0.4
858
Normal
-0.4
127
Tumor
-0.4
328
Normal
-0.4
568
Normal
-0.4
361
Tumor
-0.5
984
Normal
-0.5
864
Normal
-0.5
447
Tumor
-0.5
882
Normal
-0.5
1044
Normal
-0.5
355
Tumor
-0.5
267
Tumor
-0.5
862
Normal
-0.5
756
Normal
-0.5
1032
Normal
-0.5
737
Tumor
-0.5
954
Normal
-0.5
354
Normal
-0.5
482
Normal
-0.5
356
Normal
-0.5
534
Normal
-0.5
433
Tumor
-0.5
497
Tumor
-0.5
526
Normal
-0.5
663
Tumor
-0.5
916
Normal
-0.5
467
Tumor
-0.5
648
Normal
-0.5
636
Normal
-0.5
1045
Tumor
-0.5
922
Normal
-0.5
364
Normal
-0.5
713
Tumor
-0.5
384
Normal
-0.5
533
Tumor
-0.5
852
Normal
-0.6
884
Normal
-0.6
686
Normal
-0.6
415
Tumor
-0.6
723
Tumor
-0.6
221
Tumor
-0.6
695
Tumor
-0.6
968
Normal
-0.6
918
Normal
-0.6
478
Normal
-0.6
818
Normal
-0.6
722
Normal
-0.6
926
Normal
-0.6
477
Tumor
-0.6
435
Tumor
-0.6
957
Tumor
-0.6
353
Tumor
-0.6
696
Normal
-0.6
473
Tumor
-0.6
615
Tumor
-0.6
664
Normal
-0.6
666
Normal
-0.6
716
Normal
-0.6
665
Tumor
-0.6
967
Tumor
-0.6
191
Tumor
-0.6
331
Tumor
-0.6
131
Tumor
-0.6
647
Tumor
-0.6
923
Tumor
-0.6
714
Normal
-0.7
978
Normal
-0.7
964
Normal
-0.7
912
Normal
-0.7
351
Tumor
-0.7
481
Tumor
-0.7
517
Tumor
-0.7
431
Tumor
-0.7
563
Tumor
-0.7
965
Tumor
-0.7
671
Tumor
-0.7
672
Normal
-0.7
863
Tumor
-0.7
528
Normal
-0.7
617
Tumor
-0.7
564
Normal
-0.8
425
Tumor
-0.8
524
Normal
-0.8
958
Normal
-0.8
1046
Normal
-0.8
727
Tumor
-0.8
558
Normal
-0.8
572
Normal
-0.9
743
Tumor
-0.9
628
Normal
-0.9
514
Normal
-0.9
616
Normal
-1.0
641
Tumor
-1.1
571
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
