MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:14.1 nTPM
GTEx:15.7 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:22.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.2
2019 Male, age 18, unknown 15.0
2666 Male, age 74, left hemisphere 13.3
2411 Female, age 72, unknown 13.1
1870 Female, age 42, unknown 13.0
2828 Female, age 72, unknown 11.9
1833 Male, age 53, unknown 11.7
1827 Male, age 72, unknown 11.6
1830 Male, age 51, unknown 11.1
2219 Male, age 76, both hemispheres 10.6
2586 Male, age 75, left hemisphere 10.5
Dorsal raphe nucleus
nTPM: 13.2
2298 Female, age 72, unknown 14.2
1828 Male, age 53, unknown 13.0
2016 Female, age 72, unknown 13.0
2750 Male, age 76, both hemispheres 12.9
2047 Male, age 72, unknown 12.8
Inferior colliculus
nTPM: 12.1
1890 Male, age 53, unknown 13.2
1848 Female, age 42, unknown 12.8
2097 Female, age 72, unknown 12.4
2849 Male, age 72, unknown 9.9
Median raphe nucleus
nTPM: 12.6
2220 Male, age 76, midline 12.6
Periaquaductal grey, anterior
nTPM: 13.4
1947 Male, age 18, unknown 13.9
1795 Male, age 51, unknown 13.6
2502 Female, age 75, unknown 12.7
Periaquaductal grey, dorsal
nTPM: 11.3
2850 Male, age 76, both hemispheres 11.9
2464 Female, age 72, unknown 11.8
1831 Male, age 72, unknown 11.4
1840 Male, age 53, unknown 10.0
Periaquaductal grey, lateral
nTPM: 10.9
2140 Male, age 76, both hemispheres 11.4
2053 Male, age 18, unknown 10.9
2272 Male, age 74, both hemispheres 10.3
Pretectal area
nTPM: 13.0
2007 Male, age 72, unknown 16.9
1817 Female, age 42, unknown 15.5
1815 Male, age 53, unknown 15.3
1816 Male, age 51, unknown 14.1
1944 Female, age 72, unknown 13.1
2273 Male, age 74, both hemispheres 12.1
2667 Female, age 75, unknown 11.8
2407 Male, age 75, both hemispheres 11.3
2316 Male, age 76, right hemisphere 11.1
2825 Male, age 18, unknown 11.1
2224 Female, age 72, unknown 10.4
Red nucleus
nTPM: 12.2
1821 Female, age 72, unknown 16.1
2823 Male, age 76, right hemisphere 13.0
1954 Female, age 42, unknown 12.7
2785 Male, age 18, unknown 12.7
1865 Male, age 51, unknown 12.6
2503 Female, age 72, unknown 11.8
2725 Female, age 75, unknown 11.8
1904 Male, age 53, unknown 11.6
2584 Male, age 75, left hemisphere 11.6
2588 Male, age 74, left hemisphere 11.5
2227 Male, age 72, unknown 11.1
2769 Male, age 72, unknown 10.1
Substantia nigra
nTPM: 14.1
2241 Male, age 72, unknown 18.1
1851 Male, age 51, unknown 14.9
1941 Male, age 53, unknown 14.9
2665 Male, age 74, both hemispheres 14.7
2583 Male, age 75, right hemisphere 14.3
1889 Female, age 72, unknown 14.2
2590 Female, age 75, unknown 13.6
1916 Female, age 42, unknown 13.3
2409 Female, age 72, unknown 11.9
2699 Male, age 18, unknown 11.3
Superior colliculus
nTPM: 12.4
2668 Female, age 75, unknown 15.0
2261 Male, age 18, unknown 13.1
2587 Male, age 74, left hemisphere 12.9
1796 Male, age 53, unknown 12.7
1913 Female, age 42, unknown 12.6
2087 Female, age 72, unknown 12.5
1839 Male, age 51, unknown 12.4
1995 Male, age 72, unknown 12.1
1895 Male, age 76, right hemisphere 11.3
2664 Male, age 75, both hemispheres 9.6
Ventral tegmental area
nTPM: 11.9
2410 Female, age 72, unknown 14.3
1915 Female, age 42, unknown 13.4
2218 Male, age 76, both hemispheres 11.6
2223 Female, age 72, unknown 11.6
1942 Male, age 51, unknown 10.4
2021 Male, age 53, unknown 10.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 22.5
Min nTPM: 11.6
Std nTPM: 1.9
Median nTPM: 15.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 22.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 20.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 20.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 19.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 19.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 19.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 19.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 19.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.0
Sample A Female 17.5
Sample B Female 15.3
Sample C Male 14.0
Sample D Male 16.2
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 13.0
Sample A Female 22.0
Sample B Female 16.1
Sample C Male 13.0
Sample D Male 13.4
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 19.7
Min nTPM: 17.2
Sample B Female 19.3
Sample C Male 19.7
Sample D Male 17.2
Superior colliculi
nTPM: 15.8
Samples: 4

Max nTPM: 17.2
Min nTPM: 14.2
Sample A Female 16.6
Sample B Female 17.2
Sample C Male 14.2
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 25.4
Min nTPM: 21.4
Sample A Male 22.2
Sample B Male 21.4
Sample C Female 25.4
Sample D Female 22.3

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