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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF10 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
192.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
117.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
115.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
106.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
104.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
103.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
101.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
101.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
93.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
92.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
90.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
89.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
87.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
87.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
85.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
83.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
83.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
83.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
82.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
82.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
81.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
79.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
77.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
76.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
76.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
76.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
76.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
75.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
75.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
75.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
75.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
74.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
74.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
74.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
74.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
73.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
73.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
72.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
72.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
72.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
72.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
72.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
72.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
71.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
71.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
71.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
70.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
70.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
69.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
69.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
69.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
68.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
68.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
68.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
67.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
67.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
66.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
66.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
66.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
66.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
65.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
65.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
65.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
65.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
64.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
64.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
64.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
64.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
64.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
63.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
63.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
62.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
62.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
62.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
61.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
61.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
61.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
61.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
61.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
61.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
60.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
60.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
59.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
59.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
59.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
59.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
59.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
58.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
58.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
58.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
58.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
58.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
58.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
57.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
57.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
57.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
56.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
56.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
56.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
56.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
56.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
56.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
55.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
55.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
55.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
55.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
54.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
54.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
54.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
54.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
54.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
53.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
53.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
53.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
52.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
52.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
52.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
51.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
51.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
51.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
51.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
51.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
51.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
51.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
51.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
51.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
50.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
50.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
50.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
50.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
50.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
49.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
49.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
49.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
49.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
49.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
48.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
48.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
47.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
47.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
47.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
47.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
47.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
46.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
45.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
45.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
45.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
45.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
45.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
44.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
44.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
44.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
44.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
44.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
44.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
44.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
43.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
43.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
43.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
43.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
42.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
42.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
42.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
42.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
41.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
41.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
41.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
40.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
38.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
37.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
37.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
37.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
35.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
32.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
30.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF10 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.5
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
117.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
87.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
68.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
61.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
58.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
57.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
51.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
51.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
49.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
49.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
45.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
43.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
42.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
40.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
39.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
2.2
285
Tumor
1.3
487
Tumor
1.2
983
Tumor
0.9
957
Tumor
0.9
497
Tumor
0.9
568
Normal
0.9
283
Tumor
0.9
484
Normal
0.9
572
Normal
0.9
981
Tumor
0.8
535
Tumor
0.8
864
Normal
0.8
114
Normal
0.8
564
Normal
0.8
664
Normal
0.8
648
Normal
0.8
861
Tumor
0.7
488
Normal
0.7
498
Normal
0.7
494
Normal
0.7
966
Normal
0.7
978
Normal
0.7
1016
Normal
0.7
435
Tumor
0.6
977
Tumor
0.6
228
Normal
0.6
1014
Normal
0.6
873
Tumor
0.6
223
Tumor
0.6
943
Tumor
0.5
574
Normal
0.5
1013
Tumor
0.5
128
Normal
0.5
862
Normal
0.5
492
Normal
0.5
127
Tumor
0.5
925
Tumor
0.5
868
Normal
0.5
493
Tumor
0.5
558
Normal
0.5
563
Tumor
0.5
984
Normal
0.5
666
Normal
0.4
953
Tumor
0.4
1043
Tumor
0.4
672
Normal
0.4
923
Tumor
0.4
113
Tumor
0.4
982
Normal
0.4
482
Normal
0.4
111
Normal
0.4
211
Tumor
0.4
916
Normal
0.4
967
Tumor
0.4
778
Normal
0.4
968
Normal
0.4
915
Tumor
0.4
697
Tumor
0.3
284
Normal
0.3
1015
Tumor
0.3
866
Normal
0.3
462
Normal
0.3
1045
Tumor
0.3
926
Normal
0.3
738
Normal
0.3
481
Tumor
0.3
917
Tumor
0.3
937
Tumor
0.3
431
Tumor
0.3
212
Normal
0.3
536
Normal
0.3
662
Normal
0.3
472
Normal
0.2
571
Tumor
0.2
474
Normal
0.2
746
Normal
0.2
786
Normal
0.2
224
Normal
0.2
477
Tumor
0.2
698
Normal
0.2
955
Tumor
0.2
491
Tumor
0.2
124
Normal
0.1
874
Normal
0.1
478
Normal
0.1
448
Normal
0.1
557
Tumor
0.1
432
Normal
0.1
756
Normal
0.1
918
Normal
0.1
922
Normal
0.1
944
Normal
0.1
286
Normal
0.1
436
Normal
0.1
952
Normal
0.1
112
Tumor
0.0
975
Tumor
0.0
964
Normal
0.0
954
Normal
0.0
1046
Normal
0.0
461
Tumor
0.0
723
Tumor
0.0
447
Tumor
0.0
963
Tumor
0.0
924
Normal
-0.1
483
Tumor
-0.1
938
Normal
-0.1
446
Normal
-0.1
958
Normal
-0.1
433
Tumor
-0.1
1044
Normal
-0.1
471
Tumor
-0.1
227
Tumor
-0.2
965
Tumor
-0.2
956
Normal
-0.2
742
Normal
-0.2
126
Normal
-0.2
567
Tumor
-0.2
443
Tumor
-0.3
473
Tumor
-0.3
921
Tumor
-0.3
976
Normal
-0.3
444
Normal
-0.3
573
Tumor
-0.3
951
Tumor
-0.3
755
Tumor
-0.4
867
Tumor
-0.4
745
Tumor
-0.4
125
Tumor
-0.4
728
Normal
-0.4
737
Tumor
-0.4
434
Normal
-0.4
814
Normal
-0.5
744
Normal
-0.5
724
Normal
-0.6
123
Tumor
-0.6
727
Tumor
-0.6
743
Tumor
-0.6
863
Tumor
-0.6
445
Tumor
-0.6
777
Tumor
-0.7
741
Tumor
-0.7
785
Tumor
-0.8
813
Tumor
-0.8
663
Tumor
-1.6
647
Tumor
-2.0
665
Tumor
-2.4
671
Tumor
-3.4
661
Tumor
-3.7
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
545
Tumor
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
553
Tumor
N/A
312
Normal
N/A
554
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
332
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
