MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.2 nTPM
HPA Brain:89.3 nTPM
GTEx:72.2 nTPM
FANTOM5:185.6 Scaled Tags Per Million
Pig:123.9 nTPM
Mouse:85.0 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.2
2586 Male, age 75, left hemisphere 109.3
2019 Male, age 18, unknown 83.1
2666 Male, age 74, left hemisphere 80.3
1830 Male, age 51, unknown 79.3
2411 Female, age 72, unknown 77.6
1833 Male, age 53, unknown 77.2
1870 Female, age 42, unknown 76.8
1827 Male, age 72, unknown 74.3
2828 Female, age 72, unknown 70.9
2219 Male, age 76, both hemispheres 63.3
Dorsal raphe nucleus
nTPM: 75.1
2298 Female, age 72, unknown 78.0
1828 Male, age 53, unknown 77.1
2750 Male, age 76, both hemispheres 76.0
2047 Male, age 72, unknown 74.6
2016 Female, age 72, unknown 69.9
Inferior colliculus
nTPM: 71.2
2097 Female, age 72, unknown 72.8
1890 Male, age 53, unknown 72.2
1848 Female, age 42, unknown 71.5
2849 Male, age 72, unknown 68.4
Median raphe nucleus
nTPM: 70.4
2220 Male, age 76, midline 70.4
Periaquaductal grey, anterior
nTPM: 73.2
2502 Female, age 75, unknown 77.1
1947 Male, age 18, unknown 74.6
1795 Male, age 51, unknown 67.9
Periaquaductal grey, dorsal
nTPM: 67.0
1840 Male, age 53, unknown 72.8
1831 Male, age 72, unknown 66.2
2850 Male, age 76, both hemispheres 65.7
2464 Female, age 72, unknown 63.1
Periaquaductal grey, lateral
nTPM: 66.2
2140 Male, age 76, both hemispheres 71.9
2053 Male, age 18, unknown 66.4
2272 Male, age 74, both hemispheres 60.5
Pretectal area
nTPM: 72.8
1817 Female, age 42, unknown 79.7
2007 Male, age 72, unknown 78.3
2825 Male, age 18, unknown 75.8
1815 Male, age 53, unknown 75.7
1816 Male, age 51, unknown 74.9
2407 Male, age 75, both hemispheres 74.6
1944 Female, age 72, unknown 73.7
2667 Female, age 75, unknown 73.5
2224 Female, age 72, unknown 68.6
2316 Male, age 76, right hemisphere 68.2
2273 Male, age 74, both hemispheres 57.4
Red nucleus
nTPM: 82.5
1821 Female, age 72, unknown 92.7
2588 Male, age 74, left hemisphere 90.1
1904 Male, age 53, unknown 87.8
1865 Male, age 51, unknown 86.6
2584 Male, age 75, left hemisphere 83.8
1954 Female, age 42, unknown 81.1
2725 Female, age 75, unknown 80.5
2823 Male, age 76, right hemisphere 80.5
2503 Female, age 72, unknown 79.5
2785 Male, age 18, unknown 78.3
2769 Male, age 72, unknown 74.6
2227 Male, age 72, unknown 74.4
Substantia nigra
nTPM: 89.3
2241 Male, age 72, unknown 116.4
1916 Female, age 42, unknown 102.8
1851 Male, age 51, unknown 96.5
2583 Male, age 75, right hemisphere 94.0
2665 Male, age 74, both hemispheres 91.3
2409 Female, age 72, unknown 83.0
2699 Male, age 18, unknown 79.2
1941 Male, age 53, unknown 77.0
1889 Female, age 72, unknown 76.7
2590 Female, age 75, unknown 76.3
Superior colliculus
nTPM: 74.9
2664 Male, age 75, both hemispheres 86.7
2668 Female, age 75, unknown 83.0
2261 Male, age 18, unknown 77.4
2587 Male, age 74, left hemisphere 73.4
1796 Male, age 53, unknown 73.1
1913 Female, age 42, unknown 72.6
1895 Male, age 76, right hemisphere 71.9
1995 Male, age 72, unknown 71.8
1839 Male, age 51, unknown 71.2
2087 Female, age 72, unknown 68.2
Ventral tegmental area
nTPM: 79.8
2410 Female, age 72, unknown 88.1
1915 Female, age 42, unknown 81.7
2223 Female, age 72, unknown 81.4
2218 Male, age 76, both hemispheres 77.2
2021 Male, age 53, unknown 75.3
1942 Male, age 51, unknown 75.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.2
Samples: 139

Max nTPM: 172.9
Min nTPM: 46.7
Std nTPM: 17.5
Median nTPM: 69.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 172.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 147.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 115.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 110.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 108.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 107.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 101.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 99.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 99.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 97.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 93.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 185.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 185.6
FF:10158-103A5 76 years, female 185.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 123.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.6
Samples: 4

Max nTPM: 125.5
Min nTPM: 104.3
Sample A Female 125.5
Sample B Female 109.2
Sample C Male 104.3
Sample D Male 111.4
Midbrain
nTPM: 123.9
Samples: 4

Max nTPM: 140.7
Min nTPM: 107.9
Sample A Female 140.7
Sample B Female 107.9
Sample C Male 129.6
Sample D Male 117.4
Periaqueductal gray
nTPM: 108.1
Samples: 3

Max nTPM: 117.1
Min nTPM: 101.9
Sample B Female 105.4
Sample C Male 117.1
Sample D Male 101.9
Superior colliculi
nTPM: 117.8
Samples: 4

Max nTPM: 127.0
Min nTPM: 110.9
Sample A Female 127.0
Sample B Female 112.7
Sample C Male 110.9
Sample D Male 120.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 85.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 91.6
Min nTPM: 77.4
Sample A Male 88.6
Sample B Male 77.4
Sample C Female 82.4
Sample D Female 91.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
294052 Antisense, RP_040617_02_F11, Mouse strain C57BL/6J (56 days, male) 8.5
67936005 Antisense, RP_041018_01_F01, Mouse strain C57BL/6J (56 days, male) 7.0

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