MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:26.9 nTPM
GTEx:9.3 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:46.9 nTPM
Mouse:23.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
1870 Female, age 42, unknown 31.2
2411 Female, age 72, unknown 27.7
1833 Male, age 53, unknown 26.2
1830 Male, age 51, unknown 26.1
2219 Male, age 76, both hemispheres 25.3
2019 Male, age 18, unknown 25.0
2666 Male, age 74, left hemisphere 24.2
1827 Male, age 72, unknown 23.1
2586 Male, age 75, left hemisphere 22.9
2828 Female, age 72, unknown 20.9
Dorsal raphe nucleus
nTPM: 22.6
2750 Male, age 76, both hemispheres 27.6
2016 Female, age 72, unknown 22.6
2047 Male, age 72, unknown 22.0
1828 Male, age 53, unknown 21.2
2298 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 24.4
1848 Female, age 42, unknown 23.2
1890 Male, age 53, unknown 22.3
2849 Male, age 72, unknown 22.3
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Periaquaductal grey, anterior
nTPM: 25.8
1947 Male, age 18, unknown 28.6
2502 Female, age 75, unknown 27.3
1795 Male, age 51, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 21.6
1840 Male, age 53, unknown 23.9
2464 Female, age 72, unknown 23.8
2850 Male, age 76, both hemispheres 19.8
1831 Male, age 72, unknown 19.1
Periaquaductal grey, lateral
nTPM: 18.8
2053 Male, age 18, unknown 20.0
2140 Male, age 76, both hemispheres 18.5
2272 Male, age 74, both hemispheres 17.8
Pretectal area
nTPM: 21.0
2007 Male, age 72, unknown 23.6
2825 Male, age 18, unknown 22.6
1815 Male, age 53, unknown 22.4
1817 Female, age 42, unknown 22.1
2224 Female, age 72, unknown 21.1
1944 Female, age 72, unknown 21.0
2316 Male, age 76, right hemisphere 20.9
2667 Female, age 75, unknown 19.7
2273 Male, age 74, both hemispheres 19.6
2407 Male, age 75, both hemispheres 19.3
1816 Male, age 51, unknown 19.1
Red nucleus
nTPM: 26.9
1904 Male, age 53, unknown 30.4
1865 Male, age 51, unknown 29.7
1821 Female, age 72, unknown 29.3
1954 Female, age 42, unknown 29.1
2503 Female, age 72, unknown 27.9
2769 Male, age 72, unknown 27.2
2227 Male, age 72, unknown 27.0
2823 Male, age 76, right hemisphere 25.4
2588 Male, age 74, left hemisphere 24.7
2725 Female, age 75, unknown 24.6
2584 Male, age 75, left hemisphere 24.0
2785 Male, age 18, unknown 23.1
Substantia nigra
nTPM: 25.1
2409 Female, age 72, unknown 31.0
2241 Male, age 72, unknown 28.1
1916 Female, age 42, unknown 26.3
1851 Male, age 51, unknown 25.6
1889 Female, age 72, unknown 23.6
2699 Male, age 18, unknown 23.6
1941 Male, age 53, unknown 23.4
2583 Male, age 75, right hemisphere 23.2
2590 Female, age 75, unknown 23.2
2665 Male, age 74, both hemispheres 22.9
Superior colliculus
nTPM: 22.9
2668 Female, age 75, unknown 26.5
1913 Female, age 42, unknown 25.6
1839 Male, age 51, unknown 25.1
2587 Male, age 74, left hemisphere 24.3
1895 Male, age 76, right hemisphere 24.0
1995 Male, age 72, unknown 22.6
2261 Male, age 18, unknown 21.7
1796 Male, age 53, unknown 21.1
2664 Male, age 75, both hemispheres 19.0
2087 Female, age 72, unknown 18.7
Ventral tegmental area
nTPM: 24.3
2223 Female, age 72, unknown 27.9
2410 Female, age 72, unknown 25.3
1942 Male, age 51, unknown 24.4
1915 Female, age 42, unknown 23.7
2218 Male, age 76, both hemispheres 22.9
2021 Male, age 53, unknown 21.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 19.5
Min nTPM: 5.1
Std nTPM: 2.3
Median nTPM: 8.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 15.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 15.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 14.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 13.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 13.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 13.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 13.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.4
Samples: 4

Max nTPM: 49.8
Min nTPM: 35.6
Sample A Female 49.8
Sample B Female 35.6
Sample C Male 44.1
Sample D Male 43.9
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 62.6
Min nTPM: 36.9
Sample A Female 62.6
Sample B Female 48.8
Sample C Male 39.3
Sample D Male 36.9
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 38.9
Min nTPM: 36.8
Sample B Female 38.9
Sample C Male 38.2
Sample D Male 36.8
Superior colliculi
nTPM: 39.3
Samples: 4

Max nTPM: 44.2
Min nTPM: 28.0
Sample A Female 44.2
Sample B Female 28.0
Sample C Male 42.6
Sample D Male 42.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 26.1
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 23.8
Sample C Female 26.1
Sample D Female 24.5

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