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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLT8D1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
112.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
104.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
97.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
85.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
78.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
77.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
76.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
75.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
74.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
74.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
72.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
71.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
69.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
68.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
66.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
65.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
65.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
62.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
61.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
61.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
61.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
58.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
54.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
53.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
51.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
50.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
46.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
44.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
39.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
36.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GLT8D1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.1
Number of samples
231
Samples
Sample
Description
TPM
DO50832
0 years, male, NA, stage:3, alive, 90 days
110.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
105.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
100.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
100.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
88.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
83.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
81.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
76.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
76.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
75.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
74.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
73.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
72.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
69.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
68.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
68.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
67.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
66.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
62.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
61.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
60.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
59.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
59.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
59.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
57.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
56.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
56.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
55.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
52.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
52.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
51.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
50.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
50.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
50.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
50.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
50.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
49.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
49.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
49.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
48.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
48.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
48.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
47.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
47.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
46.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
45.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
45.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
42.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
42.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
41.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
40.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
39.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
39.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
39.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
37.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
37.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
36.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
2.3
911
Tumor
1.8
981
Tumor
1.4
965
Tumor
1.3
1015
Tumor
1.0
395
Tumor
1.0
558
Normal
1.0
696
Normal
0.9
741
Tumor
0.9
721
Tumor
0.9
195
Tumor
0.9
715
Tumor
0.8
353
Tumor
0.8
451
Tumor
0.8
955
Tumor
0.8
191
Tumor
0.8
261
Tumor
0.8
617
Tumor
0.8
368
Normal
0.8
917
Tumor
0.7
852
Normal
0.7
533
Tumor
0.7
1028
Normal
0.7
477
Tumor
0.7
145
Tumor
0.6
433
Tumor
0.6
524
Normal
0.6
724
Normal
0.6
481
Tumor
0.6
434
Normal
0.6
123
Tumor
0.6
857
Tumor
0.6
868
Normal
0.6
467
Tumor
0.6
913
Tumor
0.6
427
Tumor
0.6
363
Tumor
0.6
713
Tumor
0.6
563
Tumor
0.6
214
Normal
0.5
284
Normal
0.5
516
Normal
0.5
665
Tumor
0.5
983
Tumor
0.5
492
Normal
0.5
977
Tumor
0.5
864
Normal
0.5
228
Normal
0.5
444
Normal
0.5
557
Tumor
0.5
978
Normal
0.5
722
Normal
0.5
268
Normal
0.5
212
Normal
0.5
188
Normal
0.5
877
Tumor
0.5
958
Normal
0.4
232
Normal
0.4
615
Tumor
0.4
1044
Normal
0.4
873
Tumor
0.4
953
Tumor
0.4
468
Normal
0.4
861
Tumor
0.4
1042
Normal
0.4
227
Tumor
0.4
916
Normal
0.4
538
Normal
0.4
526
Normal
0.4
816
Normal
0.4
141
Tumor
0.4
192
Normal
0.4
327
Tumor
0.4
943
Tumor
0.4
662
Normal
0.4
915
Tumor
0.4
728
Normal
0.4
536
Normal
0.4
341
Tumor
0.4
478
Normal
0.3
213
Tumor
0.3
918
Normal
0.3
384
Normal
0.3
1022
Normal
0.3
423
Tumor
0.3
513
Tumor
0.3
196
Normal
0.3
187
Tumor
0.3
224
Normal
0.3
362
Normal
0.3
738
Normal
0.3
124
Normal
0.3
727
Tumor
0.3
572
Normal
0.3
365
Tumor
0.3
778
Normal
0.3
421
Tumor
0.3
514
Normal
0.3
954
Normal
0.3
867
Tumor
0.3
138
Normal
0.3
494
Normal
0.3
1045
Tumor
0.3
112
Tumor
0.3
312
Normal
0.3
862
Normal
0.3
383
Tumor
0.3
1032
Normal
0.3
627
Tumor
0.3
984
Normal
0.2
132
Normal
0.2
392
Normal
0.2
415
Tumor
0.2
716
Normal
0.2
162
Normal
0.2
756
Normal
0.2
474
Normal
0.2
361
Tumor
0.2
815
Tumor
0.2
356
Normal
0.2
966
Normal
0.2
286
Normal
0.2
1026
Normal
0.2
814
Normal
0.2
956
Normal
0.2
642
Normal
0.2
926
Normal
0.2
817
Tumor
0.2
354
Normal
0.2
498
Normal
0.2
925
Tumor
0.2
262
Normal
0.1
127
Tumor
0.1
952
Normal
0.1
217
Tumor
0.1
937
Tumor
0.1
564
Normal
0.1
257
Tumor
0.1
222
Normal
0.1
146
Normal
0.1
851
Tumor
0.1
528
Normal
0.1
328
Normal
0.1
283
Tumor
0.1
447
Tumor
0.1
355
Tumor
0.1
491
Tumor
0.1
554
Normal
0.1
881
Tumor
0.1
278
Normal
0.1
723
Tumor
0.1
964
Normal
0.1
272
Normal
0.1
912
Normal
0.1
223
Tumor
0.1
137
Tumor
0.1
1014
Normal
0.1
448
Normal
0.1
545
Tumor
0.1
218
Normal
0.1
698
Normal
0.1
874
Normal
0.1
332
Normal
0.1
922
Normal
0.1
745
Tumor
0.1
435
Tumor
0.1
976
Normal
0.1
171
Tumor
0.1
858
Normal
0.1
185
Tumor
0.1
388
Normal
0.1
386
Normal
0.1
818
Normal
0.1
568
Normal
0.1
534
Normal
0.0
136
Normal
0.0
456
Normal
0.0
142
Normal
0.0
914
Normal
0.0
882
Normal
0.0
211
Tumor
0.0
571
Tumor
0.0
1027
Tumor
0.0
714
Normal
0.0
924
Normal
0.0
574
Normal
0.0
364
Normal
0.0
412
Normal
0.0
161
Tumor
0.0
546
Normal
0.0
413
Tumor
0.0
464
Normal
0.0
737
Tumor
0.0
636
Normal
0.0
267
Tumor
0.0
385
Tumor
0.0
823
Tumor
0.0
746
Normal
0.0
517
Tumor
0.0
428
Normal
0.0
416
Normal
0.0
466
Normal
0.0
443
Tumor
0.0
616
Normal
0.0
452
Normal
0.0
968
Normal
0.0
878
Normal
0.0
366
Normal
0.0
298
Normal
0.0
944
Normal
0.0
424
Normal
0.0
462
Normal
0.0
482
Normal
0.0
884
Normal
-0.1
951
Tumor
-0.1
671
Tumor
-0.1
422
Normal
-0.1
938
Normal
-0.1
426
Normal
-0.1
344
Normal
-0.1
446
Normal
-0.1
472
Normal
-0.1
686
Normal
-0.1
411
Tumor
-0.1
484
Normal
-0.1
461
Tumor
-0.1
172
Normal
-0.1
483
Tumor
-0.1
471
Tumor
-0.1
786
Normal
-0.1
672
Normal
-0.1
231
Tumor
-0.1
824
Normal
-0.1
1016
Normal
-0.1
488
Normal
-0.1
114
Normal
-0.1
982
Normal
-0.1
376
Normal
-0.1
813
Tumor
-0.1
351
Tumor
-0.1
923
Tumor
-0.1
186
Normal
-0.1
258
Normal
-0.1
618
Normal
-0.1
331
Tumor
-0.1
515
Tumor
-0.2
432
Normal
-0.2
396
Normal
-0.2
666
Normal
-0.2
641
Tumor
-0.2
314
Normal
-0.2
358
Normal
-0.2
957
Tumor
-0.2
126
Normal
-0.2
1043
Tumor
-0.2
647
Tumor
-0.2
148
Normal
-0.2
535
Tumor
-0.2
661
Tumor
-0.2
391
Tumor
-0.2
863
Tumor
-0.2
525
Tumor
-0.2
865
Tumor
-0.2
742
Normal
-0.2
393
Tumor
-0.3
697
Tumor
-0.3
975
Tumor
-0.3
436
Normal
-0.3
1046
Normal
-0.3
343
Tumor
-0.3
963
Tumor
-0.3
367
Tumor
-0.3
518
Normal
-0.3
465
Tumor
-0.3
866
Normal
-0.3
628
Normal
-0.3
1025
Tumor
-0.3
414
Normal
-0.3
221
Tumor
-0.3
431
Tumor
-0.3
1031
Tumor
-0.3
785
Tumor
-0.3
147
Tumor
-0.3
387
Tumor
-0.3
883
Tumor
-0.4
744
Normal
-0.4
463
Tumor
-0.4
131
Tumor
-0.4
394
Normal
-0.4
425
Tumor
-0.4
297
Tumor
-0.4
271
Tumor
-0.4
445
Tumor
-0.4
473
Tumor
-0.4
648
Normal
-0.4
553
Tumor
-0.4
277
Tumor
-0.4
493
Tumor
-0.5
1021
Tumor
-0.5
455
Tumor
-0.5
311
Tumor
-0.5
743
Tumor
-0.5
967
Tumor
-0.5
128
Normal
-0.5
111
Normal
-0.5
777
Tumor
-0.5
285
Tumor
-0.5
664
Normal
-0.5
113
Tumor
-0.5
921
Tumor
-0.6
487
Tumor
-0.6
695
Tumor
-0.6
1013
Tumor
-0.6
352
Normal
-0.6
497
Tumor
-0.6
357
Tumor
-0.6
135
Tumor
-0.6
573
Tumor
-0.6
375
Tumor
-0.6
342
Normal
-0.7
537
Tumor
-0.8
635
Tumor
-0.8
523
Tumor
-0.9
527
Tumor
-0.9
685
Tumor
-0.9
755
Tumor
-0.9
663
Tumor
-0.9
313
Tumor
-1.0
567
Tumor
-1.0
125
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.