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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MDH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
150.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
393.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
387.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
380.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
368.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
335.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
330.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
329.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
313.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
308.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
305.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
305.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
300.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
299.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
298.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
287.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
275.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
274.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
274.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
267.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
267.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
267.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
266.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
264.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
263.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
260.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
256.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
253.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
247.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
246.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
244.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
244.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
243.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
240.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
239.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
239.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
238.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
236.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
233.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
233.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
233.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
232.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
232.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
231.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
230.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
226.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
225.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
223.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
223.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
222.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
222.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
221.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
220.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
219.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
219.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
219.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
217.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
214.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
213.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
213.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
208.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
208.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
208.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
207.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
205.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
202.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
202.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
201.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
200.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
200.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
200.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
200.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
200.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
199.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
198.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
198.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
196.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
194.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
194.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
193.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
193.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
192.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
191.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
190.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
190.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
190.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
188.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
188.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
187.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
186.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
186.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
186.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
185.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
185.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
183.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
183.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
182.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
182.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
182.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
181.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
180.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
179.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
178.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
178.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
177.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
177.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
176.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
176.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
175.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
173.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
173.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
173.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
171.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
171.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
170.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
169.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
169.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
169.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
168.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
168.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
168.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
167.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
166.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
166.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
165.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
165.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
165.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
165.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
164.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
164.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
164.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
163.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
163.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
162.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
161.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
161.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
160.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
160.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
157.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
157.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
156.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
156.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
156.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
155.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
155.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
154.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
154.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
154.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
154.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
153.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
153.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
153.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
152.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
152.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
150.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
149.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
149.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
148.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
148.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
147.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
147.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
147.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
147.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
146.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
146.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
146.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
146.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
145.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
145.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
144.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
144.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
144.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
144.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
143.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
142.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
142.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
142.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
141.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
141.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
141.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
140.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
140.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
140.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
139.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
139.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
139.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
138.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
138.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
137.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
137.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
137.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
136.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
136.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
136.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
136.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
136.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
136.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
136.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
135.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
135.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
135.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
135.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
135.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
135.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
135.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
133.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
132.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
130.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
130.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
130.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
130.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
129.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
129.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
127.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
127.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
127.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
126.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
126.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
126.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
126.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
125.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
125.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
125.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
124.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
123.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
123.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
123.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
123.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
123.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
122.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
122.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
122.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
122.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
121.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
121.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
120.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
120.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
120.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
119.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
118.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
117.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
117.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
117.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
117.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
116.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
116.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
116.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
115.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
114.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
114.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
113.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
113.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
113.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
113.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
112.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
112.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
111.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
111.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
111.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
110.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
109.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
109.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
109.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
109.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
108.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
108.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
108.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
107.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
107.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
106.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
106.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
106.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
106.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
105.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
105.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
105.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
104.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
104.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
104.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
104.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
104.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
102.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
102.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
102.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
101.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
101.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
100.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
100.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
99.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
98.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
97.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
97.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
96.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
95.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
95.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
94.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
94.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
94.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
94.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
94.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
94.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
94.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
93.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
93.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
93.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
92.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
92.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
92.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
92.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
91.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
91.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
91.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
89.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
87.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
86.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
86.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
86.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
85.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
82.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
82.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
82.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
81.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
81.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
81.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
81.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
80.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
80.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
80.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
76.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
76.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
75.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
75.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
75.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
73.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
72.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
68.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
67.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
67.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
66.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
65.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
65.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
63.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
63.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
63.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
61.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
60.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
59.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
53.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
52.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
52.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
51.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
49.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
47.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MDH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
131.1
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
588.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
386.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
384.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
310.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
271.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
270.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
265.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
262.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
257.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
255.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
252.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
251.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
247.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
245.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
233.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
232.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
226.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
215.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
215.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
210.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
209.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
207.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
203.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
202.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
202.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
197.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
197.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
197.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
195.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
189.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
188.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
186.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
185.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
182.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
181.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
176.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
172.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
170.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
170.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
168.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
168.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
167.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
164.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
164.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
164.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
164.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
163.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
163.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
159.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
158.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
158.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
158.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
157.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
157.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
157.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
155.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
155.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
154.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
153.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
150.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
150.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
150.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
149.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
147.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
147.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
146.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
145.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
145.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
144.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
143.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
143.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
143.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
142.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
141.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
141.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
140.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
139.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
139.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
139.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
138.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
138.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
137.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
137.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
136.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
136.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
135.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
133.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
133.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
133.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
133.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
132.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
132.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
131.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
131.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
130.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
130.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
130.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
130.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
129.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
129.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
129.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
129.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
128.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
127.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
127.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
127.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
127.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
125.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
125.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
125.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
125.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
124.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
124.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
123.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
123.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
122.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
121.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
121.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
119.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
118.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
117.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
117.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
116.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
116.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
116.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
116.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
114.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
114.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
113.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
113.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
113.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
112.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
111.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
111.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
110.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
110.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
109.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
107.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
107.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
106.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
106.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
105.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
105.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
105.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
104.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
104.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
104.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
103.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
103.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
103.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
103.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
103.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
102.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
101.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
101.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
100.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
100.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
98.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
96.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
96.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
96.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
96.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
95.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
95.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
95.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
95.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
94.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
93.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
93.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
93.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
93.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
91.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
91.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
91.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
90.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
90.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
90.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
88.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
88.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
86.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
85.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
84.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
84.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
83.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
83.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
82.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
82.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
81.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
81.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
80.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
79.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
78.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
78.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
78.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
77.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
77.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
77.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
76.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
74.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
74.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
73.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
72.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
72.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
72.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
71.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
70.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
70.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
68.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
68.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
67.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
67.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
67.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
67.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
67.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
65.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
65.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
65.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
65.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
65.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
63.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
62.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
61.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
58.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
57.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
54.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
53.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
49.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
46.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
38.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.0
571
Tumor
0.9
745
Tumor
0.8
257
Tumor
0.7
357
Tumor
0.7
393
Tumor
0.7
481
Tumor
0.6
513
Tumor
0.6
416
Normal
0.5
1013
Tumor
0.5
981
Tumor
0.5
698
Normal
0.5
436
Normal
0.4
1022
Normal
0.4
482
Normal
0.4
785
Tumor
0.4
546
Normal
0.4
818
Normal
0.4
1042
Normal
0.4
515
Tumor
0.4
982
Normal
0.4
685
Tumor
0.4
1026
Normal
0.4
953
Tumor
0.4
824
Normal
0.4
873
Tumor
0.3
742
Normal
0.3
738
Normal
0.3
364
Normal
0.3
472
Normal
0.3
924
Normal
0.3
1044
Normal
0.3
952
Normal
0.3
518
Normal
0.3
516
Normal
0.3
915
Tumor
0.3
448
Normal
0.3
128
Normal
0.3
465
Tumor
0.3
862
Normal
0.3
723
Tumor
0.3
111
Normal
0.3
944
Normal
0.3
882
Normal
0.3
728
Normal
0.3
227
Tumor
0.3
746
Normal
0.3
938
Normal
0.3
955
Tumor
0.2
484
Normal
0.2
212
Normal
0.2
722
Normal
0.2
627
Tumor
0.2
527
Tumor
0.2
864
Normal
0.2
741
Tumor
0.2
912
Normal
0.2
514
Normal
0.2
1032
Normal
0.2
1046
Normal
0.2
756
Normal
0.2
228
Normal
0.2
816
Normal
0.2
858
Normal
0.2
272
Normal
0.2
964
Normal
0.2
483
Tumor
0.2
435
Tumor
0.2
714
Normal
0.2
884
Normal
0.2
342
Normal
0.2
462
Normal
0.2
874
Normal
0.2
412
Normal
0.2
488
Normal
0.2
922
Normal
0.2
956
Normal
0.2
852
Normal
0.2
114
Normal
0.2
958
Normal
0.2
386
Normal
0.2
648
Normal
0.2
923
Tumor
0.2
432
Normal
0.2
286
Normal
0.2
966
Normal
0.2
716
Normal
0.2
356
Normal
0.2
954
Normal
0.2
1014
Normal
0.2
528
Normal
0.2
1016
Normal
0.2
696
Normal
0.2
918
Normal
0.2
328
Normal
0.2
984
Normal
0.2
914
Normal
0.1
916
Normal
0.1
278
Normal
0.1
662
Normal
0.1
422
Normal
0.1
474
Normal
0.1
314
Normal
0.1
186
Normal
0.1
727
Tumor
0.1
926
Normal
0.1
666
Normal
0.1
786
Normal
0.1
313
Tumor
0.1
362
Normal
0.1
664
Normal
0.1
456
Normal
0.1
298
Normal
0.1
744
Normal
0.1
978
Normal
0.1
616
Normal
0.1
414
Normal
0.1
618
Normal
0.1
534
Normal
0.1
162
Normal
0.1
172
Normal
0.1
635
Tumor
0.1
976
Normal
0.1
464
Normal
0.1
365
Tumor
0.1
778
Normal
0.1
196
Normal
0.1
146
Normal
0.1
866
Normal
0.1
452
Normal
0.1
148
Normal
0.1
376
Normal
0.1
695
Tumor
0.1
125
Tumor
0.1
1028
Normal
0.1
132
Normal
0.1
777
Tumor
0.1
232
Normal
0.1
312
Normal
0.1
428
Normal
0.1
878
Normal
0.1
1043
Tumor
0.1
494
Normal
0.1
214
Normal
0.1
138
Normal
0.1
361
Tumor
0.1
477
Tumor
0.1
424
Normal
0.1
423
Tumor
0.1
341
Tumor
0.1
686
Normal
0.1
258
Normal
0.1
628
Normal
0.1
526
Normal
0.1
332
Normal
0.1
123
Tumor
0.1
136
Normal
0.1
568
Normal
0.1
358
Normal
0.1
394
Normal
0.1
558
Normal
0.1
538
Normal
0.1
478
Normal
0.0
222
Normal
0.0
615
Tumor
0.0
563
Tumor
0.0
445
Tumor
0.0
137
Tumor
0.0
487
Tumor
0.0
564
Normal
0.0
968
Normal
0.0
126
Normal
0.0
426
Normal
0.0
567
Tumor
0.0
327
Tumor
0.0
737
Tumor
0.0
354
Normal
0.0
262
Normal
0.0
1045
Tumor
0.0
392
Normal
0.0
636
Normal
0.0
466
Normal
0.0
415
Tumor
0.0
218
Normal
0.0
642
Normal
0.0
446
Normal
0.0
537
Tumor
0.0
366
Normal
0.0
523
Tumor
0.0
284
Normal
0.0
554
Normal
0.0
491
Tumor
0.0
388
Normal
0.0
468
Normal
0.0
868
Normal
0.0
188
Normal
0.0
142
Normal
0.0
195
Tumor
-0.1
124
Normal
-0.1
755
Tumor
-0.1
147
Tumor
-0.1
572
Normal
-0.1
431
Tumor
-0.1
1025
Tumor
-0.1
461
Tumor
-0.1
498
Normal
-0.1
185
Tumor
-0.1
224
Normal
-0.1
261
Tumor
-0.1
823
Tumor
-0.1
353
Tumor
-0.1
524
Normal
-0.1
957
Tumor
-0.1
161
Tumor
-0.1
663
Tumor
-0.1
112
Tumor
-0.1
434
Normal
-0.1
344
Normal
-0.1
672
Normal
-0.1
352
Normal
-0.1
697
Tumor
-0.1
396
Normal
-0.1
533
Tumor
-0.1
443
Tumor
-0.2
967
Tumor
-0.2
425
Tumor
-0.2
368
Normal
-0.2
141
Tumor
-0.2
925
Tumor
-0.2
492
Normal
-0.2
557
Tumor
-0.2
444
Normal
-0.2
1021
Tumor
-0.2
813
Tumor
-0.2
384
Normal
-0.2
574
Normal
-0.2
127
Tumor
-0.2
536
Normal
-0.2
1031
Tumor
-0.2
187
Tumor
-0.2
857
Tumor
-0.2
411
Tumor
-0.2
713
Tumor
-0.2
517
Tumor
-0.2
145
Tumor
-0.2
192
Normal
-0.3
268
Normal
-0.3
421
Tumor
-0.3
867
Tumor
-0.3
721
Tumor
-0.3
171
Tumor
-0.3
433
Tumor
-0.3
665
Tumor
-0.3
647
Tumor
-0.3
1041
Tumor
-0.3
231
Tumor
-0.3
861
Tumor
-0.3
963
Tumor
-0.3
883
Tumor
-0.3
427
Tumor
-0.3
553
Tumor
-0.3
493
Tumor
-0.4
113
Tumor
-0.4
525
Tumor
-0.4
743
Tumor
-0.4
545
Tumor
-0.4
271
Tumor
-0.4
355
Tumor
-0.4
815
Tumor
-0.4
383
Tumor
-0.4
131
Tumor
-0.4
1015
Tumor
-0.4
267
Tumor
-0.4
455
Tumor
-0.4
447
Tumor
-0.4
297
Tumor
-0.4
617
Tumor
-0.4
814
Normal
-0.4
943
Tumor
-0.5
471
Tumor
-0.5
285
Tumor
-0.5
223
Tumor
-0.5
451
Tumor
-0.5
921
Tumor
-0.5
715
Tumor
-0.5
473
Tumor
-0.5
463
Tumor
-0.5
191
Tumor
-0.5
724
Normal
-0.5
387
Tumor
-0.5
937
Tumor
-0.5
363
Tumor
-0.5
135
Tumor
-0.5
881
Tumor
-0.5
497
Tumor
-0.5
213
Tumor
-0.5
573
Tumor
-0.5
467
Tumor
-0.5
217
Tumor
-0.6
391
Tumor
-0.6
977
Tumor
-0.6
913
Tumor
-0.6
375
Tumor
-0.6
917
Tumor
-0.6
975
Tumor
-0.7
277
Tumor
-0.7
911
Tumor
-0.7
951
Tumor
-0.7
983
Tumor
-0.7
331
Tumor
-0.7
311
Tumor
-0.7
221
Tumor
-0.8
351
Tumor
-0.8
965
Tumor
-0.8
283
Tumor
-0.8
211
Tumor
-0.8
367
Tumor
-0.8
395
Tumor
-0.9
413
Tumor
-0.9
877
Tumor
-0.9
385
Tumor
-0.9
851
Tumor
-0.9
641
Tumor
-0.9
863
Tumor
-1.0
865
Tumor
-1.0
535
Tumor
-1.0
817
Tumor
-1.0
343
Tumor
-1.1
671
Tumor
-1.1
661
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.