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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLK1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
60.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
47.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
46.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
38.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLK1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.0
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
395.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
227.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
223.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
166.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
164.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
157.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
155.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
154.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
150.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
150.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
149.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
147.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
141.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
138.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
135.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
132.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
130.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
129.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
129.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
127.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
126.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
125.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
124.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
122.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
121.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
121.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
119.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
118.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
118.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
117.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
115.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
113.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
112.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
105.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
103.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
103.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
102.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
102.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
101.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
101.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
100.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
99.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
98.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
98.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
95.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
94.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
94.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
91.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
91.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
90.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
90.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
90.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
90.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
89.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
89.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
89.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
89.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
89.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
88.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
88.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
87.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
87.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
87.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
85.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
84.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
83.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
83.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
83.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
82.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
81.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
80.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
80.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
79.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
78.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
78.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
78.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
77.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
77.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
77.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
77.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
77.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
76.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
76.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
76.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
76.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
75.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
75.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
75.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
75.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
74.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
73.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
73.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
73.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
73.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
72.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
72.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
71.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
71.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
70.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
70.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
70.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
70.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
69.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
68.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
68.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
68.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
67.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
67.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
66.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
66.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
66.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
65.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
65.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
65.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
64.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
63.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
63.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
63.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
63.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
62.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
62.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
62.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
61.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
61.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
60.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
59.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
59.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
59.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
58.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
58.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
58.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
58.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
58.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
57.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
57.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
57.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
56.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
56.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
56.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
56.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
55.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
55.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
54.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
53.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
53.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
52.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
51.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
50.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
50.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
50.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
50.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
49.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
49.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
48.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
47.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
46.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
46.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
44.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
44.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
44.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
43.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
43.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
41.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
37.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
1.2
523
Tumor
1.0
671
Tumor
0.9
351
Tumor
0.8
463
Tumor
0.8
695
Tumor
0.7
713
Tumor
0.7
353
Tumor
0.5
672
Normal
0.5
535
Tumor
0.5
877
Tumor
0.5
815
Tumor
0.5
467
Tumor
0.5
491
Tumor
0.4
277
Tumor
0.4
661
Tumor
0.4
953
Tumor
0.4
516
Normal
0.4
342
Normal
0.4
331
Tumor
0.4
367
Tumor
0.4
647
Tumor
0.4
814
Normal
0.4
571
Tumor
0.4
865
Tumor
0.4
957
Tumor
0.4
387
Tumor
0.4
937
Tumor
0.4
513
Tumor
0.3
524
Normal
0.3
394
Normal
0.3
465
Tumor
0.3
664
Normal
0.3
376
Normal
0.3
113
Tumor
0.3
755
Tumor
0.3
685
Tumor
0.3
391
Tumor
0.3
388
Normal
0.3
514
Normal
0.3
526
Normal
0.3
313
Tumor
0.3
756
Normal
0.3
286
Normal
0.3
494
Normal
0.2
473
Tumor
0.2
455
Tumor
0.2
966
Normal
0.2
938
Normal
0.2
368
Normal
0.2
923
Tumor
0.2
517
Tumor
0.2
944
Normal
0.2
954
Normal
0.2
1032
Normal
0.2
423
Tumor
0.2
114
Normal
0.2
786
Normal
0.2
943
Tumor
0.2
728
Normal
0.2
396
Normal
0.2
355
Tumor
0.2
468
Normal
0.2
228
Normal
0.2
858
Normal
0.2
432
Normal
0.2
385
Tumor
0.2
383
Tumor
0.2
433
Tumor
0.2
261
Tumor
0.2
443
Tumor
0.2
212
Normal
0.2
426
Normal
0.2
1041
Tumor
0.2
413
Tumor
0.2
464
Normal
0.2
984
Normal
0.2
1014
Normal
0.2
482
Normal
0.2
662
Normal
0.2
978
Normal
0.2
1046
Normal
0.2
982
Normal
0.2
434
Normal
0.2
422
Normal
0.2
447
Tumor
0.2
1043
Tumor
0.2
395
Tumor
0.2
285
Tumor
0.2
1044
Normal
0.2
187
Tumor
0.2
914
Normal
0.1
386
Normal
0.1
328
Normal
0.1
924
Normal
0.1
912
Normal
0.1
686
Normal
0.1
515
Tumor
0.1
497
Tumor
0.1
742
Normal
0.1
518
Normal
0.1
472
Normal
0.1
697
Tumor
0.1
715
Tumor
0.1
818
Normal
0.1
913
Tumor
0.1
112
Tumor
0.1
444
Normal
0.1
1028
Normal
0.1
861
Tumor
0.1
354
Normal
0.1
488
Normal
0.1
981
Tumor
0.1
341
Tumor
0.1
314
Normal
0.1
284
Normal
0.1
445
Tumor
0.1
926
Normal
0.1
537
Tumor
0.1
357
Tumor
0.1
456
Normal
0.1
716
Normal
0.1
431
Tumor
0.1
412
Normal
0.1
741
Tumor
0.1
436
Normal
0.1
298
Normal
0.1
392
Normal
0.1
366
Normal
0.1
983
Tumor
0.1
478
Normal
0.1
185
Tumor
0.1
278
Normal
0.1
813
Tumor
0.0
312
Normal
0.0
1013
Tumor
0.0
127
Tumor
0.0
451
Tumor
0.0
356
Normal
0.0
365
Tumor
0.0
267
Tumor
0.0
968
Normal
0.0
428
Normal
0.0
128
Normal
0.0
448
Normal
0.0
955
Tumor
0.0
126
Normal
0.0
536
Normal
0.0
222
Normal
0.0
223
Tumor
0.0
777
Tumor
0.0
484
Normal
0.0
883
Tumor
0.0
648
Normal
0.0
362
Normal
0.0
743
Tumor
0.0
474
Normal
0.0
487
Tumor
0.0
824
Normal
0.0
477
Tumor
0.0
533
Tumor
0.0
882
Normal
0.0
446
Normal
0.0
525
Tumor
0.0
857
Tumor
0.0
172
Normal
0.0
364
Normal
0.0
297
Tumor
0.0
1022
Normal
0.0
918
Normal
0.0
724
Normal
0.0
778
Normal
0.0
461
Tumor
0.0
186
Normal
0.0
416
Normal
0.0
415
Tumor
0.0
492
Normal
0.0
111
Normal
0.0
125
Tumor
0.0
956
Normal
0.0
283
Tumor
0.0
343
Tumor
-0.1
224
Normal
-0.1
393
Tumor
-0.1
863
Tumor
-0.1
727
Tumor
-0.1
466
Normal
-0.1
663
Tumor
-0.1
976
Normal
-0.1
327
Tumor
-0.1
375
Tumor
-0.1
952
Normal
-0.1
161
Tumor
-0.1
873
Tumor
-0.1
424
Normal
-0.1
746
Normal
-0.1
196
Normal
-0.1
698
Normal
-0.1
481
Tumor
-0.1
195
Tumor
-0.1
884
Normal
-0.1
1016
Normal
-0.1
384
Normal
-0.1
1031
Tumor
-0.1
452
Normal
-0.1
557
Tumor
-0.1
435
Tumor
-0.1
572
Normal
-0.1
573
Tumor
-0.1
696
Normal
-0.1
311
Tumor
-0.1
527
Tumor
-0.1
1026
Normal
-0.1
414
Normal
-0.1
534
Normal
-0.1
462
Normal
-0.1
878
Normal
-0.1
262
Normal
-0.1
538
Normal
-0.1
124
Normal
-0.1
964
Normal
-0.1
922
Normal
-0.1
1021
Tumor
-0.1
123
Tumor
-0.2
363
Tumor
-0.2
141
Tumor
-0.2
358
Normal
-0.2
483
Tumor
-0.2
911
Tumor
-0.2
232
Normal
-0.2
188
Normal
-0.2
361
Tumor
-0.2
868
Normal
-0.2
916
Normal
-0.2
564
Normal
-0.2
867
Tumor
-0.2
268
Normal
-0.2
558
Normal
-0.2
851
Tumor
-0.2
977
Tumor
-0.2
493
Tumor
-0.2
213
Tumor
-0.2
967
Tumor
-0.2
546
Normal
-0.2
864
Normal
-0.2
344
Normal
-0.2
666
Normal
-0.2
471
Tumor
-0.2
958
Normal
-0.2
852
Normal
-0.2
568
Normal
-0.2
162
Normal
-0.2
214
Normal
-0.2
737
Tumor
-0.2
218
Normal
-0.2
823
Tumor
-0.2
352
Normal
-0.2
258
Normal
-0.2
563
Tumor
-0.2
723
Tumor
-0.3
862
Normal
-0.3
915
Tumor
-0.3
148
Normal
-0.3
817
Tumor
-0.3
498
Normal
-0.3
217
Tumor
-0.3
171
Tumor
-0.3
142
Normal
-0.3
921
Tumor
-0.3
714
Normal
-0.3
816
Normal
-0.3
785
Tumor
-0.3
917
Tumor
-0.3
554
Normal
-0.3
332
Normal
-0.3
427
Tumor
-0.3
272
Normal
-0.3
1015
Tumor
-0.3
132
Normal
-0.3
192
Normal
-0.3
963
Tumor
-0.3
874
Normal
-0.3
145
Tumor
-0.3
191
Tumor
-0.3
211
Tumor
-0.3
411
Tumor
-0.4
881
Tumor
-0.4
925
Tumor
-0.4
1042
Normal
-0.4
1045
Tumor
-0.4
744
Normal
-0.4
528
Normal
-0.4
574
Normal
-0.4
721
Tumor
-0.4
146
Normal
-0.4
231
Tumor
-0.4
136
Normal
-0.4
135
Tumor
-0.4
221
Tumor
-0.4
137
Tumor
-0.4
227
Tumor
-0.4
138
Normal
-0.4
866
Normal
-0.4
567
Tumor
-0.5
951
Tumor
-0.5
965
Tumor
-0.5
545
Tumor
-0.5
425
Tumor
-0.5
1025
Tumor
-0.5
722
Normal
-0.5
1027
Tumor
-0.6
147
Tumor
-0.6
738
Normal
-0.7
257
Tumor
-0.7
421
Tumor
-0.7
553
Tumor
-0.7
271
Tumor
-0.8
745
Tumor
-0.8
975
Tumor
-0.8
131
Tumor
-0.9
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
