We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
74.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
68.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
63.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
61.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
60.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
71.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
64.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
51.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
47.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
47.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
43.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
41.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
37.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
36.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.1
425
Tumor
1.0
635
Tumor
0.9
123
Tumor
0.8
497
Tumor
0.8
865
Tumor
0.7
327
Tumor
0.7
231
Tumor
0.7
911
Tumor
0.6
977
Tumor
0.6
365
Tumor
0.6
171
Tumor
0.6
965
Tumor
0.5
785
Tumor
0.5
915
Tumor
0.5
375
Tumor
0.5
213
Tumor
0.5
661
Tumor
0.5
477
Tumor
0.5
1013
Tumor
0.5
473
Tumor
0.5
311
Tumor
0.4
461
Tumor
0.4
1027
Tumor
0.4
1015
Tumor
0.4
262
Normal
0.4
913
Tumor
0.4
627
Tumor
0.4
113
Tumor
0.4
493
Tumor
0.4
861
Tumor
0.4
573
Tumor
0.4
647
Tumor
0.4
391
Tumor
0.3
663
Tumor
0.3
978
Normal
0.3
777
Tumor
0.3
975
Tumor
0.3
883
Tumor
0.3
951
Tumor
0.3
141
Tumor
0.3
463
Tumor
0.3
341
Tumor
0.3
383
Tumor
0.3
413
Tumor
0.3
1045
Tumor
0.3
695
Tumor
0.3
267
Tumor
0.3
351
Tumor
0.3
1043
Tumor
0.3
867
Tumor
0.3
615
Tumor
0.3
423
Tumor
0.2
966
Normal
0.2
724
Normal
0.2
427
Tumor
0.2
195
Tumor
0.2
714
Normal
0.2
483
Tumor
0.2
617
Tumor
0.2
277
Tumor
0.2
616
Normal
0.2
261
Tumor
0.2
465
Tumor
0.2
553
Tumor
0.2
451
Tumor
0.2
567
Tumor
0.2
515
Tumor
0.2
963
Tumor
0.2
221
Tumor
0.2
257
Tumor
0.2
721
Tumor
0.2
857
Tumor
0.2
445
Tumor
0.2
285
Tumor
0.2
268
Normal
0.2
628
Normal
0.2
126
Normal
0.2
554
Normal
0.2
411
Tumor
0.2
1016
Normal
0.2
518
Normal
0.2
188
Normal
0.2
666
Normal
0.2
192
Normal
0.2
722
Normal
0.2
481
Tumor
0.2
952
Normal
0.2
755
Tumor
0.2
434
Normal
0.2
665
Tumor
0.1
416
Normal
0.1
313
Tumor
0.1
386
Normal
0.1
716
Normal
0.1
526
Normal
0.1
217
Tumor
0.1
422
Normal
0.1
955
Tumor
0.1
127
Tumor
0.1
466
Normal
0.1
258
Normal
0.1
925
Tumor
0.1
738
Normal
0.1
487
Tumor
0.1
482
Normal
0.1
393
Tumor
0.1
366
Normal
0.1
297
Tumor
0.1
671
Tumor
0.1
1042
Normal
0.1
741
Tumor
0.1
492
Normal
0.1
696
Normal
0.1
312
Normal
0.1
436
Normal
0.1
642
Normal
0.1
917
Tumor
0.1
138
Normal
0.1
744
Normal
0.1
396
Normal
0.1
131
Tumor
0.1
686
Normal
0.1
513
Tumor
0.1
146
Normal
0.1
478
Normal
0.1
136
Normal
0.1
355
Tumor
0.1
328
Normal
0.1
272
Normal
0.1
358
Normal
0.1
863
Tumor
0.1
723
Tumor
0.1
428
Normal
0.1
662
Normal
0.1
472
Normal
0.1
471
Tumor
0.1
222
Normal
0.1
362
Normal
0.1
232
Normal
0.1
685
Tumor
0.1
881
Tumor
0.1
982
Normal
0.1
1031
Tumor
0.0
421
Tumor
0.0
132
Normal
0.0
332
Normal
0.0
191
Tumor
0.0
147
Tumor
0.0
756
Normal
0.0
546
Normal
0.0
664
Normal
0.0
468
Normal
0.0
444
Normal
0.0
815
Tumor
0.0
618
Normal
0.0
446
Normal
0.0
361
Tumor
0.0
433
Tumor
0.0
395
Tumor
0.0
218
Normal
0.0
342
Normal
0.0
527
Tumor
0.0
214
Normal
0.0
514
Normal
0.0
636
Normal
0.0
474
Normal
0.0
114
Normal
0.0
172
Normal
0.0
224
Normal
0.0
298
Normal
0.0
574
Normal
0.0
426
Normal
0.0
462
Normal
0.0
488
Normal
0.0
641
Tumor
0.0
648
Normal
0.0
354
Normal
0.0
742
Normal
0.0
528
Normal
0.0
452
Normal
0.0
953
Tumor
0.0
538
Normal
0.0
148
Normal
0.0
385
Tumor
0.0
778
Normal
0.0
464
Normal
0.0
916
Normal
0.0
558
Normal
0.0
278
Normal
0.0
414
Normal
0.0
431
Tumor
0.0
135
Tumor
0.0
728
Normal
0.0
697
Tumor
0.0
568
Normal
0.0
455
Tumor
0.0
823
Tumor
0.0
1022
Normal
0.0
456
Normal
0.0
364
Normal
0.0
914
Normal
0.0
384
Normal
0.0
858
Normal
0.0
111
Normal
0.0
376
Normal
0.0
874
Normal
0.0
976
Normal
0.0
186
Normal
0.0
392
Normal
0.0
786
Normal
0.0
964
Normal
0.0
467
Tumor
0.0
535
Tumor
0.0
943
Tumor
0.0
498
Normal
0.0
926
Normal
0.0
884
Normal
0.0
448
Normal
0.0
368
Normal
0.0
271
Tumor
0.0
1026
Normal
0.0
424
Normal
0.0
491
Tumor
0.0
435
Tumor
0.0
851
Tumor
0.0
852
Normal
0.0
938
Normal
0.0
142
Normal
-0.1
415
Tumor
-0.1
228
Normal
-0.1
864
Normal
-0.1
432
Normal
-0.1
128
Normal
-0.1
868
Normal
-0.1
516
Normal
-0.1
1046
Normal
-0.1
866
Normal
-0.1
984
Normal
-0.1
958
Normal
-0.1
746
Normal
-0.1
912
Normal
-0.1
824
Normal
-0.1
314
Normal
-0.1
484
Normal
-0.1
494
Normal
-0.1
727
Tumor
-0.1
715
Tumor
-0.1
352
Normal
-0.1
125
Tumor
-0.1
743
Tumor
-0.1
818
Normal
-0.1
185
Tumor
-0.1
1021
Tumor
-0.1
1014
Normal
-0.1
196
Normal
-0.1
187
Tumor
-0.1
145
Tumor
-0.1
937
Tumor
-0.1
862
Normal
-0.1
956
Normal
-0.1
698
Normal
-0.1
1028
Normal
-0.1
1041
Tumor
-0.1
344
Normal
-0.1
572
Normal
-0.1
882
Normal
-0.1
536
Normal
-0.1
523
Tumor
-0.1
124
Normal
-0.1
924
Normal
-0.1
517
Tumor
-0.1
737
Tumor
-0.1
713
Tumor
-0.1
814
Normal
-0.1
284
Normal
-0.1
387
Tumor
-0.1
1044
Normal
-0.1
816
Normal
-0.1
534
Normal
-0.1
356
Normal
-0.1
524
Normal
-0.1
162
Normal
-0.1
388
Normal
-0.1
922
Normal
-0.1
223
Tumor
-0.1
564
Normal
-0.1
918
Normal
-0.1
212
Normal
-0.2
921
Tumor
-0.2
286
Normal
-0.2
983
Tumor
-0.2
394
Normal
-0.2
557
Tumor
-0.2
745
Tumor
-0.2
357
Tumor
-0.2
112
Tumor
-0.2
981
Tumor
-0.2
873
Tumor
-0.2
1032
Normal
-0.2
944
Normal
-0.2
563
Tumor
-0.2
412
Normal
-0.2
954
Normal
-0.2
353
Tumor
-0.2
161
Tumor
-0.2
672
Normal
-0.2
968
Normal
-0.2
367
Tumor
-0.2
923
Tumor
-0.2
283
Tumor
-0.2
447
Tumor
-0.2
571
Tumor
-0.3
545
Tumor
-0.3
343
Tumor
-0.3
137
Tumor
-0.3
967
Tumor
-0.3
331
Tumor
-0.3
817
Tumor
-0.3
813
Tumor
-0.4
227
Tumor
-0.4
957
Tumor
-0.4
537
Tumor
-0.4
533
Tumor
-0.5
1025
Tumor
-0.5
363
Tumor
-0.5
443
Tumor
-0.5
525
Tumor
-0.6
878
Normal
-0.6
877
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
