MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:37.1 nTPM
GTEx:20.5 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:56.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.8
2411 Female, age 72, unknown 36.7
1827 Male, age 72, unknown 33.8
2586 Male, age 75, left hemisphere 33.0
2666 Male, age 74, left hemisphere 33.0
1833 Male, age 53, unknown 32.9
2019 Male, age 18, unknown 32.9
1830 Male, age 51, unknown 32.2
1870 Female, age 42, unknown 31.7
2828 Female, age 72, unknown 31.1
2219 Male, age 76, both hemispheres 30.4
Dorsal raphe nucleus
nTPM: 35.1
2298 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 35.8
2750 Male, age 76, both hemispheres 35.6
1828 Male, age 53, unknown 33.9
2016 Female, age 72, unknown 31.4
Inferior colliculus
nTPM: 31.6
2849 Male, age 72, unknown 32.5
2097 Female, age 72, unknown 32.1
1848 Female, age 42, unknown 31.0
1890 Male, age 53, unknown 30.9
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Periaquaductal grey, anterior
nTPM: 37.1
1947 Male, age 18, unknown 40.4
2502 Female, age 75, unknown 37.8
1795 Male, age 51, unknown 33.1
Periaquaductal grey, dorsal
nTPM: 32.6
2850 Male, age 76, both hemispheres 34.3
1840 Male, age 53, unknown 34.0
1831 Male, age 72, unknown 31.4
2464 Female, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 34.2
2272 Male, age 74, both hemispheres 37.7
2140 Male, age 76, both hemispheres 34.9
2053 Male, age 18, unknown 30.1
Pretectal area
nTPM: 31.7
2273 Male, age 74, both hemispheres 37.7
2224 Female, age 72, unknown 34.2
1817 Female, age 42, unknown 32.9
1816 Male, age 51, unknown 32.5
2316 Male, age 76, right hemisphere 32.4
2825 Male, age 18, unknown 31.7
2007 Male, age 72, unknown 30.9
1815 Male, age 53, unknown 30.7
2407 Male, age 75, both hemispheres 29.0
2667 Female, age 75, unknown 28.9
1944 Female, age 72, unknown 28.2
Red nucleus
nTPM: 32.1
1821 Female, age 72, unknown 35.5
2588 Male, age 74, left hemisphere 34.4
1865 Male, age 51, unknown 32.9
2823 Male, age 76, right hemisphere 32.8
2785 Male, age 18, unknown 32.3
1904 Male, age 53, unknown 32.2
2227 Male, age 72, unknown 31.8
2769 Male, age 72, unknown 31.7
2584 Male, age 75, left hemisphere 31.4
1954 Female, age 42, unknown 31.2
2503 Female, age 72, unknown 29.5
2725 Female, age 75, unknown 29.0
Substantia nigra
nTPM: 34.1
1916 Female, age 42, unknown 41.1
2241 Male, age 72, unknown 39.5
1851 Male, age 51, unknown 36.4
1941 Male, age 53, unknown 35.6
2699 Male, age 18, unknown 35.6
2590 Female, age 75, unknown 34.4
1889 Female, age 72, unknown 31.3
2665 Male, age 74, both hemispheres 30.8
2583 Male, age 75, right hemisphere 29.4
2409 Female, age 72, unknown 26.9
Superior colliculus
nTPM: 31.0
2668 Female, age 75, unknown 36.0
1895 Male, age 76, right hemisphere 33.5
1796 Male, age 53, unknown 32.1
2587 Male, age 74, left hemisphere 31.4
1839 Male, age 51, unknown 31.1
2087 Female, age 72, unknown 30.9
2261 Male, age 18, unknown 29.9
2664 Male, age 75, both hemispheres 29.9
1913 Female, age 42, unknown 29.0
1995 Male, age 72, unknown 26.2
Ventral tegmental area
nTPM: 33.4
2218 Male, age 76, both hemispheres 36.3
1915 Female, age 42, unknown 35.5
2410 Female, age 72, unknown 34.1
1942 Male, age 51, unknown 33.2
2021 Male, age 53, unknown 31.5
2223 Female, age 72, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 28.7
Min nTPM: 12.8
Std nTPM: 2.7
Median nTPM: 20.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 26.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 25.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 25.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 24.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.4
Samples: 4

Max nTPM: 35.9
Min nTPM: 29.4
Sample A Female 35.9
Sample B Female 30.6
Sample C Male 29.7
Sample D Male 29.4
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 43.5
Min nTPM: 30.8
Sample A Female 43.5
Sample B Female 31.4
Sample C Male 30.8
Sample D Male 33.3
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 32.3
Min nTPM: 28.0
Sample B Female 29.5
Sample C Male 32.3
Sample D Male 28.0
Superior colliculi
nTPM: 34.4
Samples: 4

Max nTPM: 40.9
Min nTPM: 30.6
Sample A Female 40.9
Sample B Female 32.4
Sample C Male 30.6
Sample D Male 33.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 56.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 57.2
Min nTPM: 54.8
Sample A Male 54.8
Sample B Male 57.2
Sample C Female 57.0
Sample D Female 56.9

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