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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MVP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
276.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
261.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
238.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
234.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
224.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
216.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
214.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
212.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
198.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
198.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
167.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
165.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
162.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
157.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
152.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
151.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
149.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
147.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
146.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
146.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
146.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
145.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
139.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
138.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
135.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
134.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
132.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
129.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
128.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
122.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
118.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
116.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
115.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
114.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
113.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
112.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
111.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
110.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
110.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
109.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
109.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
108.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
107.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
106.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
105.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
104.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
104.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
103.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
102.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
102.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
101.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
101.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
101.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
100.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
99.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
99.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
97.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
97.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
95.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
95.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
95.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
94.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
94.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
94.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
93.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
90.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
88.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
88.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
87.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
87.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
87.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
87.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
87.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
86.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
86.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
86.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
86.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
85.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
85.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
85.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
85.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
84.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
84.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
84.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
83.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
83.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
82.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
81.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
81.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
81.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
80.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
80.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
79.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
77.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
77.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
76.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
75.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
75.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
75.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
75.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
74.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
74.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
74.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
73.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
73.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
73.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
73.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
73.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
72.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
72.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
71.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
71.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
71.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
71.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
70.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
70.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
70.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
70.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
70.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
69.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
68.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
68.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
68.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
67.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
67.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
67.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
66.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
66.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
66.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
65.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
65.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
65.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
65.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
65.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
65.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
65.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
65.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
64.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
64.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
63.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
63.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
62.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
62.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
61.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
61.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
61.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
61.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
61.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
61.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
60.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
60.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
60.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
60.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
59.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
59.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
58.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
58.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
57.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
56.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
56.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
55.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
55.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
55.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
55.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
55.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
54.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
54.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
54.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
52.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
52.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
51.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
50.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
50.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
50.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
50.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
50.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
49.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
49.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
48.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
48.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
47.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
47.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
47.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
46.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
46.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
46.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
46.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
43.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
42.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
39.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
39.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
38.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
38.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
37.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
36.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
35.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
30.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MVP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.4
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
213.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
196.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
176.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
170.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
167.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
161.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
160.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
157.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
143.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
142.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
132.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
129.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
124.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
124.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
120.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
113.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
110.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
106.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
103.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
103.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
102.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
101.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
101.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
98.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
95.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
94.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
90.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
89.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
88.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
87.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
86.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
83.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
82.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
78.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
77.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
76.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
76.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
76.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
75.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
74.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
72.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
68.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
68.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
66.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
66.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
65.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
64.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
64.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
64.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
64.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
63.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
63.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
63.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
62.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
61.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
60.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
59.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
58.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
58.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
58.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
57.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
57.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
56.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
55.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
54.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
54.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
54.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
53.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
53.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
52.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
52.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
51.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
48.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
47.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
47.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
46.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
43.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
43.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
42.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
42.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
36.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
34.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
2.2
685
Tumor
2.1
925
Tumor
1.7
953
Tumor
1.4
817
Tumor
1.4
311
Tumor
1.3
917
Tumor
1.3
533
Tumor
1.2
913
Tumor
1.2
937
Tumor
1.2
451
Tumor
1.2
313
Tumor
1.1
513
Tumor
1.1
641
Tumor
1.1
1013
Tumor
1.1
137
Tumor
1.0
145
Tumor
1.0
191
Tumor
1.0
573
Tumor
0.9
697
Tumor
0.9
387
Tumor
0.9
663
Tumor
0.9
525
Tumor
0.9
527
Tumor
0.9
545
Tumor
0.8
981
Tumor
0.8
535
Tumor
0.8
195
Tumor
0.8
857
Tumor
0.8
851
Tumor
0.8
724
Normal
0.8
395
Tumor
0.8
755
Tumor
0.7
557
Tumor
0.7
627
Tumor
0.7
327
Tumor
0.7
147
Tumor
0.7
257
Tumor
0.7
223
Tumor
0.6
883
Tumor
0.6
467
Tumor
0.6
427
Tumor
0.6
375
Tumor
0.5
211
Tumor
0.5
497
Tumor
0.5
536
Normal
0.4
187
Tumor
0.4
343
Tumor
0.4
957
Tumor
0.4
421
Tumor
0.4
383
Tumor
0.4
741
Tumor
0.4
745
Tumor
0.4
185
Tumor
0.4
553
Tumor
0.4
444
Normal
0.4
524
Normal
0.4
983
Tumor
0.4
423
Tumor
0.3
455
Tumor
0.3
943
Tumor
0.3
916
Normal
0.3
355
Tumor
0.3
461
Tumor
0.3
873
Tumor
0.3
283
Tumor
0.3
443
Tumor
0.3
492
Normal
0.3
713
Tumor
0.3
361
Tumor
0.3
434
Normal
0.3
978
Normal
0.3
563
Tumor
0.3
365
Tumor
0.2
192
Normal
0.2
814
Normal
0.2
823
Tumor
0.2
141
Tumor
0.2
966
Normal
0.2
297
Tumor
0.2
268
Normal
0.2
135
Tumor
0.2
447
Tumor
0.2
491
Tumor
0.2
231
Tumor
0.2
498
Normal
0.2
538
Normal
0.2
777
Tumor
0.2
125
Tumor
0.2
617
Tumor
0.2
415
Tumor
0.2
267
Tumor
0.2
468
Normal
0.1
357
Tumor
0.1
721
Tumor
0.1
537
Tumor
0.1
471
Tumor
0.1
392
Normal
0.1
262
Normal
0.1
852
Normal
0.1
224
Normal
0.1
661
Tumor
0.1
686
Normal
0.1
1015
Tumor
0.1
213
Tumor
0.1
161
Tumor
0.1
286
Normal
0.1
955
Tumor
0.1
218
Normal
0.1
911
Tumor
0.1
465
Tumor
0.1
217
Tumor
0.1
1045
Tumor
0.1
923
Tumor
0.0
393
Tumor
0.0
478
Normal
0.0
874
Normal
0.0
861
Tumor
0.0
385
Tumor
0.0
368
Normal
0.0
952
Normal
0.0
1021
Tumor
0.0
514
Normal
0.0
386
Normal
0.0
126
Normal
0.0
113
Tumor
0.0
615
Tumor
0.0
188
Normal
0.0
353
Tumor
0.0
881
Tumor
-0.1
284
Normal
-0.1
212
Normal
-0.1
487
Tumor
-0.1
963
Tumor
-0.1
413
Tumor
-0.1
1041
Tumor
-0.1
384
Normal
-0.1
526
Normal
-0.1
567
Tumor
-0.1
312
Normal
-0.1
642
Normal
-0.1
228
Normal
-0.1
696
Normal
-0.1
868
Normal
-0.1
124
Normal
-0.1
477
Tumor
-0.1
1042
Normal
-0.1
528
Normal
-0.1
715
Tumor
-0.1
221
Tumor
-0.1
778
Normal
-0.1
1044
Normal
-0.1
493
Tumor
-0.1
367
Tumor
-0.1
816
Normal
-0.2
416
Normal
-0.2
424
Normal
-0.2
1028
Normal
-0.2
391
Tumor
-0.2
1026
Normal
-0.2
982
Normal
-0.2
396
Normal
-0.2
956
Normal
-0.2
914
Normal
-0.2
341
Tumor
-0.2
523
Tumor
-0.2
452
Normal
-0.2
138
Normal
-0.2
968
Normal
-0.2
411
Tumor
-0.2
414
Normal
-0.2
422
Normal
-0.2
483
Tumor
-0.2
574
Normal
-0.2
332
Normal
-0.2
647
Tumor
-0.2
558
Normal
-0.2
146
Normal
-0.2
924
Normal
-0.2
214
Normal
-0.2
867
Tumor
-0.2
975
Tumor
-0.2
926
Normal
-0.2
915
Tumor
-0.3
958
Normal
-0.3
813
Tumor
-0.3
474
Normal
-0.3
136
Normal
-0.3
1022
Normal
-0.3
662
Normal
-0.3
954
Normal
-0.3
716
Normal
-0.3
272
Normal
-0.3
261
Tumor
-0.3
328
Normal
-0.3
516
Normal
-0.3
665
Tumor
-0.3
426
Normal
-0.3
258
Normal
-0.3
984
Normal
-0.3
446
Normal
-0.3
944
Normal
-0.3
433
Tumor
-0.3
921
Tumor
-0.3
1016
Normal
-0.3
362
Normal
-0.3
722
Normal
-0.3
976
Normal
-0.3
636
Normal
-0.4
884
Normal
-0.4
314
Normal
-0.4
111
Normal
-0.4
714
Normal
-0.4
518
Normal
-0.4
142
Normal
-0.4
918
Normal
-0.4
432
Normal
-0.4
412
Normal
-0.4
364
Normal
-0.4
388
Normal
-0.4
456
Normal
-0.4
922
Normal
-0.4
1014
Normal
-0.4
448
Normal
-0.4
858
Normal
-0.4
278
Normal
-0.4
358
Normal
-0.4
618
Normal
-0.4
394
Normal
-0.4
628
Normal
-0.4
866
Normal
-0.4
967
Tumor
-0.4
127
Tumor
-0.4
366
Normal
-0.4
232
Normal
-0.5
818
Normal
-0.5
472
Normal
-0.5
464
Normal
-0.5
352
Normal
-0.5
344
Normal
-0.5
824
Normal
-0.5
114
Normal
-0.5
546
Normal
-0.5
466
Normal
-0.5
672
Normal
-0.5
564
Normal
-0.5
756
Normal
-0.5
515
Tumor
-0.5
331
Tumor
-0.5
494
Normal
-0.5
376
Normal
-0.5
882
Normal
-0.5
671
Tumor
-0.5
695
Tumor
-0.5
938
Normal
-0.5
666
Normal
-0.5
162
Normal
-0.5
298
Normal
-0.5
488
Normal
-0.5
123
Tumor
-0.6
277
Tumor
-0.6
723
Tumor
-0.6
728
Normal
-0.6
568
Normal
-0.6
534
Normal
-0.6
664
Normal
-0.6
786
Normal
-0.6
572
Normal
-0.6
463
Tumor
-0.6
271
Tumor
-0.6
738
Normal
-0.6
428
Normal
-0.6
616
Normal
-0.6
964
Normal
-0.6
865
Tumor
-0.6
354
Normal
-0.6
862
Normal
-0.6
148
Normal
-0.6
186
Normal
-0.6
698
Normal
-0.6
196
Normal
-0.6
912
Normal
-0.6
1046
Normal
-0.6
172
Normal
-0.6
1032
Normal
-0.7
462
Normal
-0.7
222
Normal
-0.7
951
Tumor
-0.7
878
Normal
-0.7
863
Tumor
-0.7
436
Normal
-0.7
363
Tumor
-0.7
554
Normal
-0.7
132
Normal
-0.7
356
Normal
-0.7
746
Normal
-0.7
1025
Tumor
-0.8
1031
Tumor
-0.8
351
Tumor
-0.8
877
Tumor
-0.8
815
Tumor
-0.8
744
Normal
-0.8
864
Normal
-0.8
648
Normal
-0.8
484
Normal
-0.9
785
Tumor
-0.9
445
Tumor
-0.9
1043
Tumor
-0.9
482
Normal
-1.0
742
Normal
-1.0
342
Normal
-1.0
977
Tumor
-1.0
171
Tumor
-1.0
737
Tumor
-1.0
128
Normal
-1.1
571
Tumor
-1.1
431
Tumor
-1.1
227
Tumor
-1.2
517
Tumor
-1.2
473
Tumor
-1.2
635
Tumor
-1.2
285
Tumor
-1.2
481
Tumor
-1.3
112
Tumor
-1.3
435
Tumor
-1.4
425
Tumor
-1.5
131
Tumor
-1.5
965
Tumor
-1.5
727
Tumor
-1.7
743
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
