HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:30.2 nTPM
GTEx:20.2 nTPM
FANTOM5:25.0 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:4.1 nTPM
Allen mouse:9.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002321Antibody HPA064740Antibody CAB002752Antibody CAB022717
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedLowLowLow









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 30.2
Sample id Sample description nTPM
Hippocampus
nTPM: 25.8
2529 Female, age 94, left hemisphere 28.9
1855 Male, age 76, left hemisphere 27.7
2148 Female, age 91, left hemisphere 25.9
1898 Male, age 80, left hemisphere 25.7
2621 Female, age 67, right hemisphere 24.0
1911 Female, age 85, right hemisphere 22.7
Dentate gyrus
nTPM: 23.2
2530 Female, age 94, left hemisphere 27.3
2010 Male, age 76, both hemispheres 26.5
2528 Male, age 74, both hemispheres 25.7
2531 Female, age 67, both hemispheres 21.3
2246 Female, age 85, both hemispheres 20.6
1927 Female, age 91, both hemispheres 17.6
Entorhinal gyrus
nTPM: 23.1
2117 Female, age 91, right hemisphere 32.0
2686 Male, age 75, right hemisphere 25.1
2764 Male, age 80, right hemisphere 23.1
1787 Male, age 76, left hemisphere 22.8
2613 Female, age 94, left hemisphere 19.3
1938 Female, age 85, left hemisphere 16.5
Hippocampus, CA1
nTPM: 20.8
2082 Female, age 91, right hemisphere 28.1
2527 Male, age 74, both hemispheres 22.1
2045 Male, age 76, both hemispheres 19.4
1873 Female, age 85, both hemispheres 19.3
2749 Male, age 80, left hemisphere 15.0
Hippocampus, CA2
nTPM: 25.7
1940 Female, age 85, left hemisphere 29.2
2437 Female, age 94, left hemisphere 29.2
2249 Male, age 74, both hemispheres 28.4
2113 Female, age 91, right hemisphere 25.3
1963 Male, age 80, left hemisphere 23.7
1892 Male, age 76, both hemispheres 18.2
Hippocampus, CA3
nTPM: 23.0
1891 Female, age 85, both hemispheres 25.5
2620 Female, age 94, left hemisphere 24.9
2436 Male, age 74, both hemispheres 24.7
1867 Male, age 76, both hemispheres 23.2
2861 Female, age 67, both hemispheres 22.7
2137 Male, age 80, left hemisphere 17.2
Parahippocampal cortex
nTPM: 20.5
2692 Male, age 74, both hemispheres 24.7
2018 Male, age 76, both hemispheres 23.7
1990 Female, age 91, right hemisphere 22.5
2532 Female, age 72, left hemisphere 22.5
2250 Female, age 67, right hemisphere 21.8
2245 Female, age 91, both hemispheres 20.4
1850 Male, age 80, both hemispheres 19.3
2622 Female, age 67, right hemisphere 18.3
2693 Female, age 94, both hemispheres 16.1
1933 Female, age 85, both hemispheres 16.0
Perirhinal gyrus
nTPM: 16.9
2521 Female, age 94, right hemisphere 19.3
1794 Male, age 80, right hemisphere 18.1
2848 Male, age 76, right hemisphere 16.3
1847 Female, age 91, left hemisphere 16.0
1841 Female, age 85, right hemisphere 15.1
Subiculum
nTPM: 30.2
2438 Female, age 94, left hemisphere 37.1
2042 Male, age 76, both hemispheres 34.6
1901 Male, age 80, both hemispheres 29.5
2729 Female, age 91, right hemisphere 27.8
2619 Male, age 74, both hemispheres 26.5
1977 Female, age 85, both hemispheres 25.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 20.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.2
Samples: 197

Max nTPM: 84.7
Min nTPM: 5.1
Std nTPM: 11.2
Median nTPM: 18.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 84.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 71.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 69.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 67.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 64.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 53.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 46.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 43.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 38.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 37.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 36.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.0
FF:10169-103B7 60 years, female 27.0
FF:10153-102I9 76 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 10.3
Pig sample Sample description nTPM
Subiculum
nTPM: 9.7
Samples: 4

Max nTPM: 13.0
Min nTPM: 7.7
Sample A Female 13.0
Sample B Female 7.7
Sample C Male 8.8
Sample D Male 9.4
Dorsal hippocampus
nTPM: 9.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 4.6
Sample A Female 13.4
Sample B Female 7.2
Sample C Male 11.9
Sample D Male 4.6
Entorhinal cortex
nTPM: 7.9
Samples: 4

Max nTPM: 11.0
Min nTPM: 5.4
Sample A Female 11.0
Sample B Female 8.0
Sample C Male 7.3
Sample D Male 5.4
Ventral hippocampus
nTPM: 10.3
Samples: 4

Max nTPM: 13.3
Min nTPM: 7.3
Sample A Female 11.1
Sample B Female 7.3
Sample C Male 13.3
Sample D Male 9.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 4.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.4
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.1
Sample A Male 3.6
Sample B Male 3.1
Sample C Female 3.1
Sample D Female 3.9
Hippocampal formation
nTPM: 4.1
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 3.6
Sample C Female 4.6
Sample D Female 5.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.9
275693 Antisense, RP_040617_01_C04, Mouse strain C57BL/6J (56 days, male) 9.9
321202 Antisense, RP_040617_01_C04, Mouse strain C57BL/6J (56 days, male) 4.9

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