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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
97.0
nTPM
HPA Brain:
92.8
nTPM
GTEx:
97.0
nTPM
FANTOM5:
1003.4
Scaled Tags Per Million
Pig:
331.5
nTPM
Mouse:
343.7
nTPM
Allen mouse:
12.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 69.5
1870
Female, age 42, unknown
98.3
2411
Female, age 72, unknown
95.7
1833
Male, age 53, unknown
91.2
1830
Male, age 51, unknown
90.6
2019
Male, age 18, unknown
71.3
2828
Female, age 72, unknown
70.5
2586
Male, age 75, left hemisphere
49.8
1827
Male, age 72, unknown
49.5
2219
Male, age 76, both hemispheres
45.1
2666
Male, age 74, left hemisphere
32.5
Dorsal raphe nucleus nTPM: 56.9
2750
Male, age 76, both hemispheres
126.3
2016
Female, age 72, unknown
57.5
1828
Male, age 53, unknown
45.9
2298
Female, age 72, unknown
29.7
2047
Male, age 72, unknown
25.0
Inferior colliculus nTPM: 44.3
2097
Female, age 72, unknown
49.3
1848
Female, age 42, unknown
45.9
1890
Male, age 53, unknown
42.1
2849
Male, age 72, unknown
39.9
Median raphe nucleus nTPM: 42.2
2220
Male, age 76, midline
42.2
Periaquaductal grey, anterior nTPM: 46.8
2502
Female, age 75, unknown
62.5
1947
Male, age 18, unknown
43.8
1795
Male, age 51, unknown
34.2
Periaquaductal grey, dorsal nTPM: 32.4
2464
Female, age 72, unknown
53.4
1831
Male, age 72, unknown
37.2
2850
Male, age 76, both hemispheres
23.7
1840
Male, age 53, unknown
15.4
Periaquaductal grey, lateral nTPM: 36.5
2272
Male, age 74, both hemispheres
45.2
2053
Male, age 18, unknown
36.5
2140
Male, age 76, both hemispheres
28.0
Pretectal area nTPM: 46.2
2316
Male, age 76, right hemisphere
71.2
1815
Male, age 53, unknown
62.2
2667
Female, age 75, unknown
61.4
2273
Male, age 74, both hemispheres
49.5
2407
Male, age 75, both hemispheres
47.5
2007
Male, age 72, unknown
46.5
1817
Female, age 42, unknown
45.5
2825
Male, age 18, unknown
45.3
2224
Female, age 72, unknown
36.4
1816
Male, age 51, unknown
22.1
1944
Female, age 72, unknown
20.3
Red nucleus nTPM: 92.8
1821
Female, age 72, unknown
124.0
2823
Male, age 76, right hemisphere
122.6
2785
Male, age 18, unknown
108.4
1865
Male, age 51, unknown
107.1
1904
Male, age 53, unknown
106.0
2227
Male, age 72, unknown
104.6
2769
Male, age 72, unknown
103.7
2503
Female, age 72, unknown
91.7
1954
Female, age 42, unknown
89.2
2584
Male, age 75, left hemisphere
61.4
2588
Male, age 74, left hemisphere
50.5
2725
Female, age 75, unknown
44.0
Substantia nigra nTPM: 41.7
1851
Male, age 51, unknown
58.7
1889
Female, age 72, unknown
53.6
2590
Female, age 75, unknown
48.8
2699
Male, age 18, unknown
45.0
2583
Male, age 75, right hemisphere
44.4
1941
Male, age 53, unknown
43.8
2409
Female, age 72, unknown
40.6
2241
Male, age 72, unknown
33.9
1916
Female, age 42, unknown
33.1
2665
Male, age 74, both hemispheres
14.8
Superior colliculus nTPM: 60.8
1913
Female, age 42, unknown
107.9
1995
Male, age 72, unknown
95.9
1895
Male, age 76, right hemisphere
71.0
2587
Male, age 74, left hemisphere
68.9
1839
Male, age 51, unknown
65.1
1796
Male, age 53, unknown
51.2
2668
Female, age 75, unknown
46.8
2261
Male, age 18, unknown
35.8
2664
Male, age 75, both hemispheres
32.7
2087
Female, age 72, unknown
32.4
Ventral tegmental area nTPM: 61.6
2223
Female, age 72, unknown
87.1
2410
Female, age 72, unknown
66.7
2218
Male, age 76, both hemispheres
60.0
1942
Male, age 51, unknown
53.6
1915
Female, age 42, unknown
51.6
2021
Male, age 53, unknown
50.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 97.0
Samples: 139
Max nTPM: 424.6
Min nTPM: 15.4
Std nTPM: 71.2
Median nTPM: 74.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
424.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
362.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
319.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
306.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
272.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
271.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
251.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
242.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
235.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
231.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
222.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
211.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
193.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
188.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
186.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
181.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
170.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
164.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
163.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
150.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
148.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
145.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
144.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
143.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
136.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
135.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
135.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
133.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
131.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
131.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
130.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
126.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
126.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
124.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
123.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
122.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
120.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
119.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
117.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
116.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
115.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
114.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
113.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
113.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
111.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
110.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
108.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
107.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
105.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
102.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
99.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
95.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
93.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
92.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
92.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
91.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
91.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
91.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
82.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
82.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
81.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
80.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
79.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
78.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
77.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
77.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
75.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
74.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
74.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
74.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
73.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
73.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
72.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
69.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
69.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
68.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
68.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
67.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
67.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
66.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
65.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
65.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
64.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
63.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
63.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
62.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
62.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
62.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
61.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
61.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
60.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
60.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
55.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
55.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
55.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
55.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
55.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
54.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
54.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
53.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
52.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
50.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
50.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
49.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
48.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
48.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
48.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
47.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
44.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
44.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
44.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
43.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
43.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
42.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
41.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
41.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
40.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
40.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
40.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
39.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
39.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
37.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
36.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
35.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
35.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
34.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
34.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
32.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
29.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
29.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
28.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
26.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
24.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
23.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
21.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
20.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
18.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
16.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
15.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
343.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 343.7
Samples: 4
Max nTPM: 389.1
Min nTPM: 280.6
Sample A
Male
317.7
Sample B
Male
280.6
Sample C
Female
389.1
Sample D
Female
387.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.