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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
101.5
nTPM
HPA Brain:
47.9
nTPM
GTEx:
101.5
nTPM
FANTOM5:
200.7
Scaled Tags Per Million
Pig:
164.5
nTPM
Mouse:
272.6
nTPM
Allen mouse:
6.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA013166
Antibody CAB009789
Glial cells
Not detected
Medium
Neuronal cells
Not detected
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 29.6
1911
Female, age 85, right hemisphere
44.0
2529
Female, age 94, left hemisphere
34.7
1898
Male, age 80, left hemisphere
32.7
2621
Female, age 67, right hemisphere
31.1
2148
Female, age 91, left hemisphere
19.6
1855
Male, age 76, left hemisphere
15.7
Dentate gyrus nTPM: 34.3
2530
Female, age 94, left hemisphere
76.7
2528
Male, age 74, both hemispheres
45.1
2246
Female, age 85, both hemispheres
25.6
2010
Male, age 76, both hemispheres
22.6
2531
Female, age 67, both hemispheres
19.8
1927
Female, age 91, both hemispheres
15.7
Entorhinal gyrus nTPM: 33.8
2117
Female, age 91, right hemisphere
74.6
2764
Male, age 80, right hemisphere
45.3
1938
Female, age 85, left hemisphere
27.1
1787
Male, age 76, left hemisphere
20.8
2613
Female, age 94, left hemisphere
20.5
2686
Male, age 75, right hemisphere
14.6
Hippocampus, CA1 nTPM: 23.8
2527
Male, age 74, both hemispheres
35.5
2082
Female, age 91, right hemisphere
29.9
1873
Female, age 85, both hemispheres
24.9
2749
Male, age 80, left hemisphere
24.1
2045
Male, age 76, both hemispheres
4.5
Hippocampus, CA2 nTPM: 34.6
2249
Male, age 74, both hemispheres
56.5
1963
Male, age 80, left hemisphere
46.8
1940
Female, age 85, left hemisphere
31.8
2437
Female, age 94, left hemisphere
31.1
2113
Female, age 91, right hemisphere
28.7
1892
Male, age 76, both hemispheres
12.7
Hippocampus, CA3 nTPM: 18.3
1891
Female, age 85, both hemispheres
53.2
2436
Male, age 74, both hemispheres
22.2
1867
Male, age 76, both hemispheres
18.4
2137
Male, age 80, left hemisphere
8.2
2620
Female, age 94, left hemisphere
4.5
2861
Female, age 67, both hemispheres
3.1
Parahippocampal cortex nTPM: 21.2
2532
Female, age 72, left hemisphere
40.4
1990
Female, age 91, right hemisphere
36.5
2692
Male, age 74, both hemispheres
31.0
1933
Female, age 85, both hemispheres
22.7
1850
Male, age 80, both hemispheres
21.8
2018
Male, age 76, both hemispheres
16.3
2245
Female, age 91, both hemispheres
15.7
2250
Female, age 67, right hemisphere
13.5
2693
Female, age 94, both hemispheres
12.8
2622
Female, age 67, right hemisphere
1.5
Perirhinal gyrus nTPM: 12.9
1794
Male, age 80, right hemisphere
16.2
2521
Female, age 94, right hemisphere
14.6
1847
Female, age 91, left hemisphere
13.0
2848
Male, age 76, right hemisphere
11.5
1841
Female, age 85, right hemisphere
9.1
Subiculum nTPM: 47.9
1901
Male, age 80, both hemispheres
67.7
2042
Male, age 76, both hemispheres
66.7
1977
Female, age 85, both hemispheres
56.4
2619
Male, age 74, both hemispheres
34.0
2438
Female, age 94, left hemisphere
31.6
2729
Female, age 91, right hemisphere
31.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 101.5
Samples: 197
Max nTPM: 451.1
Min nTPM: 5.7
Std nTPM: 82.7
Median nTPM: 76.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
451.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
432.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
347.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
339.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
322.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
322.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
317.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
313.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
279.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
278.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
242.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
242.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
241.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
239.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
238.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
236.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
234.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
232.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
232.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
231.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
229.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
220.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
216.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
195.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
193.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
189.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
185.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
184.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
182.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
178.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
176.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
169.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
165.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
165.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
164.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
160.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
159.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
157.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
156.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
156.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
153.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
150.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
149.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
147.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
145.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
143.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
143.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
141.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
141.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
141.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
139.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
138.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
133.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
133.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
130.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
130.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
130.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
128.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
127.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
125.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
122.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
121.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
120.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
120.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
118.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
116.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
115.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
114.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
113.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
109.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
107.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
107.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
107.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
103.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
102.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
99.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
99.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
95.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
95.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
95.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
94.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
94.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
93.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
93.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
92.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
91.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
90.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
90.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
88.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
85.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
84.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
82.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
80.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
79.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
78.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
77.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
77.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
76.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
76.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
75.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
74.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
73.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
73.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
72.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
72.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
70.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
70.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
69.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
68.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
67.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
67.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
66.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
66.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
66.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
65.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
63.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
63.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
56.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
56.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
56.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
55.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
55.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
54.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
54.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
53.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
53.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
52.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
52.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
51.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
51.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
50.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
50.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
50.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
49.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
48.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
48.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
47.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
44.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
43.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
43.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
43.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
42.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
42.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
42.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
42.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
41.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
41.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
40.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
40.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
39.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
39.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
39.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
38.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
38.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
37.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
37.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
37.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
36.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
36.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
36.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
35.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
34.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
34.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
33.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
33.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
33.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
33.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
32.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
28.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
28.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
28.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
27.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
27.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
26.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
26.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
25.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
25.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
24.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
24.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
23.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
23.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
21.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
18.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
16.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
16.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
15.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
14.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
14.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
13.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
11.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
9.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
8.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
7.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
6.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
6.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
5.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
5.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
272.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 121.7
Samples: 4
Max nTPM: 165.2
Min nTPM: 58.9
Sample A
Male
165.2
Sample B
Male
122.5
Sample C
Female
140.2
Sample D
Female
58.9
Hippocampal formation nTPM: 272.6
Samples: 4
Max nTPM: 437.9
Min nTPM: 155.4
Sample A
Male
155.4
Sample B
Male
211.0
Sample C
Female
437.9
Sample D
Female
286.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.