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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBTPS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBTPS2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.3
977
Tumor
1.0
1022
Normal
0.9
911
Tumor
0.9
142
Normal
0.9
473
Tumor
0.9
755
Tumor
0.8
981
Tumor
0.8
861
Tumor
0.8
351
Tumor
0.7
785
Tumor
0.7
123
Tumor
0.7
698
Normal
0.6
1026
Normal
0.6
232
Normal
0.6
261
Tumor
0.6
1015
Tumor
0.6
1013
Tumor
0.6
1046
Normal
0.6
983
Tumor
0.6
956
Normal
0.5
471
Tumor
0.5
482
Normal
0.5
355
Tumor
0.4
448
Normal
0.4
745
Tumor
0.4
984
Normal
0.4
1044
Normal
0.4
411
Tumor
0.4
112
Tumor
0.4
477
Tumor
0.4
1014
Normal
0.4
172
Normal
0.4
327
Tumor
0.4
1027
Tumor
0.4
727
Tumor
0.4
258
Normal
0.4
313
Tumor
0.3
257
Tumor
0.3
723
Tumor
0.3
756
Normal
0.3
1032
Normal
0.3
277
Tumor
0.3
746
Normal
0.3
311
Tumor
0.3
474
Normal
0.3
268
Normal
0.3
162
Normal
0.2
1028
Normal
0.2
873
Tumor
0.2
332
Normal
0.2
113
Tumor
0.2
883
Tumor
0.2
868
Normal
0.2
262
Normal
0.2
778
Normal
0.2
415
Tumor
0.2
982
Normal
0.2
363
Tumor
0.2
741
Tumor
0.2
866
Normal
0.2
186
Normal
0.1
314
Normal
0.1
272
Normal
0.1
874
Normal
0.1
128
Normal
0.1
865
Tumor
0.1
952
Normal
0.1
738
Normal
0.1
1016
Normal
0.1
312
Normal
0.1
867
Tumor
0.1
267
Tumor
0.1
862
Normal
0.1
742
Normal
0.1
864
Normal
0.1
1043
Tumor
0.1
341
Tumor
0.1
472
Normal
0.1
913
Tumor
0.1
728
Normal
0.0
481
Tumor
0.0
124
Normal
0.0
863
Tumor
0.0
356
Normal
0.0
462
Normal
0.0
297
Tumor
0.0
817
Tumor
0.0
271
Tumor
0.0
278
Normal
0.0
342
Normal
0.0
978
Normal
0.0
744
Normal
0.0
786
Normal
0.0
114
Normal
0.0
412
Normal
0.0
132
Normal
-0.1
1042
Normal
-0.1
461
Tumor
-0.1
823
Tumor
-0.1
416
Normal
-0.1
914
Normal
-0.1
148
Normal
-0.1
331
Tumor
-0.1
224
Normal
-0.1
878
Normal
-0.1
1045
Tumor
-0.1
285
Tumor
-0.1
777
Tumor
-0.1
743
Tumor
-0.1
1025
Tumor
-0.1
858
Normal
-0.1
127
Tumor
-0.1
857
Tumor
-0.1
298
Normal
-0.2
283
Tumor
-0.2
937
Tumor
-0.2
737
Tumor
-0.2
357
Tumor
-0.2
228
Normal
-0.2
881
Tumor
-0.2
882
Normal
-0.2
111
Normal
-0.2
212
Normal
-0.2
138
Normal
-0.3
1021
Tumor
-0.3
227
Tumor
-0.3
343
Tumor
-0.3
815
Tumor
-0.3
1031
Tumor
-0.3
284
Normal
-0.3
286
Normal
-0.3
816
Normal
-0.3
364
Normal
-0.3
328
Normal
-0.3
824
Normal
-0.3
125
Tumor
-0.3
1041
Tumor
-0.4
136
Normal
-0.4
126
Normal
-0.4
141
Tumor
-0.5
185
Tumor
-0.5
146
Normal
-0.5
818
Normal
-0.5
478
Normal
-0.5
955
Tumor
-0.5
951
Tumor
-0.5
536
Normal
-0.5
358
Normal
-0.5
223
Tumor
-0.5
344
Normal
-0.5
813
Tumor
-0.5
697
Tumor
-0.6
135
Tumor
-0.6
944
Normal
-0.6
137
Tumor
-0.6
953
Tumor
-0.6
912
Normal
-0.6
131
Tumor
-0.6
884
Normal
-0.6
938
Normal
-0.6
724
Normal
-0.7
852
Normal
-0.7
171
Tumor
-0.7
211
Tumor
-0.7
877
Tumor
-0.7
943
Tumor
-0.7
447
Tumor
-0.7
814
Normal
-0.8
161
Tumor
-0.8
851
Tumor
-0.8
954
Normal
-0.8
145
Tumor
-0.9
354
Normal
-0.9
352
Normal
-0.9
353
Tumor
-1.1
187
Tumor
-1.1
147
Tumor
-1.2
188
Normal
-1.3
535
Tumor
-1.5
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
487
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
433
Tumor
N/A
554
Normal
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
