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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYT7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
417.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
221.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
208.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
202.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
130.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
122.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
116.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
110.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
110.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
107.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
104.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
98.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
86.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
83.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
75.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
72.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
71.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
67.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
67.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
65.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
61.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
59.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
53.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
49.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
49.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
45.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
42.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
40.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
31.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYT7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
224.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
188.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
153.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
137.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
119.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
101.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
101.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
81.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
78.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
71.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
71.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
68.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
59.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
59.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
58.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
57.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
51.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
50.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
36.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
2.3
487
Tumor
2.1
967
Tumor
2.1
365
Tumor
1.9
393
Tumor
1.7
813
Tumor
1.6
411
Tumor
1.4
491
Tumor
1.3
937
Tumor
1.2
423
Tumor
1.2
285
Tumor
1.2
777
Tumor
1.2
557
Tumor
1.1
785
Tumor
1.0
571
Tumor
0.9
483
Tumor
0.9
615
Tumor
0.8
223
Tumor
0.8
141
Tumor
0.7
824
Normal
0.7
461
Tumor
0.7
912
Normal
0.6
465
Tumor
0.6
868
Normal
0.6
814
Normal
0.6
314
Normal
0.6
627
Tumor
0.6
388
Normal
0.6
471
Tumor
0.6
171
Tumor
0.6
357
Tumor
0.6
363
Tumor
0.6
513
Tumor
0.6
361
Tumor
0.6
391
Tumor
0.6
428
Normal
0.5
713
Tumor
0.5
396
Normal
0.5
863
Tumor
0.5
368
Normal
0.5
392
Normal
0.5
647
Tumor
0.5
367
Tumor
0.5
227
Tumor
0.5
484
Normal
0.5
356
Normal
0.4
518
Normal
0.4
464
Normal
0.4
756
Normal
0.4
328
Normal
0.4
528
Normal
0.4
786
Normal
0.4
968
Normal
0.4
394
Normal
0.4
1045
Tumor
0.4
376
Normal
0.4
327
Tumor
0.4
815
Tumor
0.4
286
Normal
0.4
641
Tumor
0.3
564
Normal
0.3
358
Normal
0.3
1042
Normal
0.3
858
Normal
0.3
353
Tumor
0.3
1046
Normal
0.3
722
Normal
0.3
921
Tumor
0.3
526
Normal
0.3
136
Normal
0.3
957
Tumor
0.3
884
Normal
0.3
422
Normal
0.3
534
Normal
0.3
964
Normal
0.3
332
Normal
0.3
1044
Normal
0.3
746
Normal
0.3
882
Normal
0.3
462
Normal
0.3
426
Normal
0.3
1043
Tumor
0.3
943
Tumor
0.3
515
Tumor
0.3
618
Normal
0.3
448
Normal
0.3
616
Normal
0.2
514
Normal
0.2
866
Normal
0.2
414
Normal
0.2
1032
Normal
0.2
354
Normal
0.2
862
Normal
0.2
714
Normal
0.2
364
Normal
0.2
147
Tumor
0.2
386
Normal
0.2
111
Normal
0.1
546
Normal
0.1
953
Tumor
0.1
874
Normal
0.1
823
Tumor
0.1
424
Normal
0.1
617
Tumor
0.1
416
Normal
0.1
162
Normal
0.1
148
Normal
0.1
914
Normal
0.1
482
Normal
0.1
558
Normal
0.1
142
Normal
0.1
628
Normal
0.1
351
Tumor
0.1
864
Normal
0.0
474
Normal
0.0
421
Tumor
0.0
258
Normal
0.0
463
Tumor
0.0
472
Normal
0.0
816
Normal
0.0
298
Normal
0.0
342
Normal
0.0
362
Normal
0.0
344
Normal
0.0
186
Normal
0.0
952
Normal
0.0
685
Tumor
0.0
568
Normal
0.0
857
Tumor
0.0
257
Tumor
0.0
938
Normal
0.0
755
Tumor
0.0
818
Normal
0.0
636
Normal
0.0
312
Normal
0.0
976
Normal
0.0
745
Tumor
-0.1
648
Normal
-0.1
455
Tumor
-0.1
642
Normal
-0.1
698
Normal
-0.1
665
Tumor
-0.1
352
Normal
-0.1
228
Normal
-0.1
666
Normal
-0.1
231
Tumor
-0.1
545
Tumor
-0.1
672
Normal
-0.1
366
Normal
-0.1
114
Normal
-0.1
481
Tumor
-0.1
384
Normal
-0.1
956
Normal
-0.1
278
Normal
-0.1
375
Tumor
-0.1
554
Normal
-0.1
212
Normal
-0.1
524
Normal
-0.1
488
Normal
-0.1
387
Tumor
-0.1
412
Normal
-0.1
172
Normal
-0.1
536
Normal
-0.2
686
Normal
-0.2
852
Normal
-0.2
955
Tumor
-0.2
778
Normal
-0.2
128
Normal
-0.2
958
Normal
-0.2
267
Tumor
-0.2
944
Normal
-0.2
395
Tumor
-0.2
664
Normal
-0.2
873
Tumor
-0.2
696
Normal
-0.2
385
Tumor
-0.2
188
Normal
-0.2
132
Normal
-0.2
126
Normal
-0.2
662
Normal
-0.2
313
Tumor
-0.2
283
Tumor
-0.2
271
Tumor
-0.2
538
Normal
-0.2
277
Tumor
-0.2
913
Tumor
-0.3
574
Normal
-0.3
262
Normal
-0.3
284
Normal
-0.3
567
Tumor
-0.3
1022
Normal
-0.3
963
Tumor
-0.3
466
Normal
-0.3
137
Tumor
-0.3
716
Normal
-0.3
572
Normal
-0.3
427
Tumor
-0.3
138
Normal
-0.3
563
Tumor
-0.3
517
Tumor
-0.3
1028
Normal
-0.3
878
Normal
-0.3
452
Normal
-0.3
527
Tumor
-0.3
661
Tumor
-0.3
261
Tumor
-0.3
671
Tumor
-0.4
341
Tumor
-0.4
187
Tumor
-0.4
635
Tumor
-0.4
494
Normal
-0.4
966
Normal
-0.4
525
Tumor
-0.4
272
Normal
-0.4
663
Tumor
-0.4
268
Normal
-0.4
516
Normal
-0.4
447
Tumor
-0.4
425
Tumor
-0.4
954
Normal
-0.4
232
Normal
-0.4
1026
Normal
-0.4
721
Tumor
-0.4
224
Normal
-0.4
498
Normal
-0.5
965
Tumor
-0.5
161
Tumor
-0.5
867
Tumor
-0.5
926
Normal
-0.5
573
Tumor
-0.5
715
Tumor
-0.5
113
Tumor
-0.6
918
Normal
-0.6
185
Tumor
-0.6
923
Tumor
-0.6
477
Tumor
-0.6
492
Normal
-0.6
533
Tumor
-0.6
1021
Tumor
-0.6
123
Tumor
-0.6
127
Tumor
-0.6
124
Normal
-0.6
975
Tumor
-0.6
877
Tumor
-0.6
456
Normal
-0.6
125
Tumor
-0.6
1027
Tumor
-0.7
553
Tumor
-0.7
413
Tumor
-0.7
331
Tumor
-0.7
383
Tumor
-0.7
478
Normal
-0.7
695
Tumor
-0.7
311
Tumor
-0.8
355
Tumor
-0.8
925
Tumor
-0.8
473
Tumor
-0.8
537
Tumor
-0.8
297
Tumor
-0.8
343
Tumor
-0.8
922
Normal
-0.9
146
Normal
-0.9
468
Normal
-0.9
697
Tumor
-0.9
881
Tumor
-0.9
535
Tumor
-0.9
851
Tumor
-0.9
145
Tumor
-1.0
916
Normal
-1.0
112
Tumor
-1.0
924
Normal
-1.0
951
Tumor
-1.1
415
Tumor
-1.1
1041
Tumor
-1.1
1025
Tumor
-1.1
131
Tumor
-1.1
467
Tumor
-1.1
883
Tumor
-1.2
915
Tumor
-1.2
451
Tumor
-1.3
917
Tumor
-1.3
817
Tumor
-1.3
135
Tumor
-1.3
911
Tumor
-1.4
865
Tumor
-1.4
497
Tumor
-1.4
211
Tumor
-1.5
493
Tumor
-1.5
861
Tumor
-1.6
1031
Tumor
-1.9
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
