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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AKAP8L is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
53.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AKAP8L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.1
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
301.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
161.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
87.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
78.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
77.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
77.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
75.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
71.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
70.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
67.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
62.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
62.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
61.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
58.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
55.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
54.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
50.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
46.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
44.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
44.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
44.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
43.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
37.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.7
965
Tumor
1.3
661
Tumor
1.1
1021
Tumor
1.1
391
Tumor
1.0
533
Tumor
1.0
285
Tumor
1.0
331
Tumor
1.0
123
Tumor
0.9
571
Tumor
0.9
865
Tumor
0.9
537
Tumor
0.9
231
Tumor
0.9
425
Tumor
0.9
567
Tumor
0.8
951
Tumor
0.8
983
Tumor
0.7
112
Tumor
0.7
267
Tumor
0.6
375
Tumor
0.6
685
Tumor
0.6
463
Tumor
0.6
755
Tumor
0.6
367
Tumor
0.6
665
Tumor
0.6
743
Tumor
0.5
355
Tumor
0.5
937
Tumor
0.5
443
Tumor
0.5
387
Tumor
0.5
923
Tumor
0.5
497
Tumor
0.5
395
Tumor
0.5
141
Tumor
0.4
513
Tumor
0.4
663
Tumor
0.4
925
Tumor
0.4
615
Tumor
0.4
137
Tumor
0.4
431
Tumor
0.4
283
Tumor
0.4
727
Tumor
0.4
383
Tumor
0.4
963
Tumor
0.4
977
Tumor
0.4
535
Tumor
0.4
277
Tumor
0.4
525
Tumor
0.4
185
Tumor
0.3
465
Tumor
0.3
351
Tumor
0.3
313
Tumor
0.3
523
Tumor
0.3
435
Tumor
0.3
785
Tumor
0.3
883
Tumor
0.3
851
Tumor
0.3
473
Tumor
0.3
131
Tumor
0.3
877
Tumor
0.3
724
Normal
0.3
813
Tumor
0.3
217
Tumor
0.3
881
Tumor
0.3
563
Tumor
0.3
161
Tumor
0.3
171
Tumor
0.3
353
Tumor
0.2
427
Tumor
0.2
545
Tumor
0.2
491
Tumor
0.2
413
Tumor
0.2
697
Tumor
0.2
815
Tumor
0.2
361
Tumor
0.2
483
Tumor
0.2
1013
Tumor
0.2
1031
Tumor
0.2
467
Tumor
0.2
423
Tumor
0.2
817
Tumor
0.2
737
Tumor
0.2
777
Tumor
0.2
527
Tumor
0.2
1027
Tumor
0.2
385
Tumor
0.2
461
Tumor
0.2
471
Tumor
0.1
341
Tumor
0.1
221
Tumor
0.1
261
Tumor
0.1
211
Tumor
0.1
953
Tumor
0.1
223
Tumor
0.1
741
Tumor
0.1
411
Tumor
0.1
823
Tumor
0.1
515
Tumor
0.1
363
Tumor
0.1
147
Tumor
0.1
125
Tumor
0.1
671
Tumor
0.1
641
Tumor
0.1
451
Tumor
0.1
695
Tumor
0.1
557
Tumor
0.1
187
Tumor
0.1
913
Tumor
0.1
1045
Tumor
0.1
297
Tumor
0.0
415
Tumor
0.0
271
Tumor
0.0
455
Tumor
0.0
1041
Tumor
0.0
113
Tumor
0.0
863
Tumor
0.0
257
Tumor
0.0
943
Tumor
0.0
517
Tumor
0.0
445
Tumor
0.0
433
Tumor
0.0
135
Tumor
0.0
127
Tumor
0.0
924
Normal
0.0
867
Tumor
0.0
911
Tumor
0.0
1032
Normal
0.0
1015
Tumor
0.0
715
Tumor
0.0
477
Tumor
0.0
617
Tumor
0.0
915
Tumor
0.0
647
Tumor
0.0
343
Tumor
0.0
648
Normal
0.0
926
Normal
-0.1
627
Tumor
-0.1
744
Normal
-0.1
921
Tumor
-0.1
1025
Tumor
-0.1
227
Tumor
-0.1
1042
Normal
-0.1
635
Tumor
-0.1
964
Normal
-0.1
365
Tumor
-0.1
1028
Normal
-0.1
714
Normal
-0.1
448
Normal
-0.1
191
Tumor
-0.1
493
Tumor
-0.1
342
Normal
-0.1
698
Normal
-0.1
554
Normal
-0.1
664
Normal
-0.1
328
Normal
-0.1
957
Tumor
-0.1
538
Normal
-0.1
482
Normal
-0.1
114
Normal
-0.1
916
Normal
-0.1
396
Normal
-0.1
553
Tumor
-0.1
444
Normal
-0.1
344
Normal
-0.1
421
Tumor
-0.1
436
Normal
-0.1
368
Normal
-0.1
672
Normal
-0.1
388
Normal
-0.2
487
Tumor
-0.2
918
Normal
-0.2
474
Normal
-0.2
213
Tumor
-0.2
432
Normal
-0.2
145
Tumor
-0.2
352
Normal
-0.2
958
Normal
-0.2
686
Normal
-0.2
452
Normal
-0.2
478
Normal
-0.2
746
Normal
-0.2
464
Normal
-0.2
1014
Normal
-0.2
1046
Normal
-0.2
357
Tumor
-0.2
636
Normal
-0.2
434
Normal
-0.2
984
Normal
-0.2
922
Normal
-0.2
412
Normal
-0.2
446
Normal
-0.2
472
Normal
-0.2
666
Normal
-0.2
111
Normal
-0.2
966
Normal
-0.2
286
Normal
-0.2
722
Normal
-0.2
195
Tumor
-0.2
447
Tumor
-0.2
466
Normal
-0.2
573
Tumor
-0.2
456
Normal
-0.2
484
Normal
-0.2
952
Normal
-0.2
526
Normal
-0.2
938
Normal
-0.2
394
Normal
-0.2
978
Normal
-0.2
662
Normal
-0.2
955
Tumor
-0.2
917
Tumor
-0.2
218
Normal
-0.2
356
Normal
-0.2
1043
Tumor
-0.2
642
Normal
-0.2
944
Normal
-0.2
618
Normal
-0.2
858
Normal
-0.2
516
Normal
-0.2
857
Tumor
-0.2
564
Normal
-0.2
824
Normal
-0.2
514
Normal
-0.2
358
Normal
-0.2
364
Normal
-0.2
354
Normal
-0.2
492
Normal
-0.2
428
Normal
-0.2
311
Tumor
-0.2
468
Normal
-0.2
1016
Normal
-0.2
393
Tumor
-0.3
968
Normal
-0.3
1044
Normal
-0.3
524
Normal
-0.3
212
Normal
-0.3
534
Normal
-0.3
258
Normal
-0.3
498
Normal
-0.3
284
Normal
-0.3
716
Normal
-0.3
128
Normal
-0.3
954
Normal
-0.3
142
Normal
-0.3
488
Normal
-0.3
786
Normal
-0.3
981
Tumor
-0.3
228
Normal
-0.3
392
Normal
-0.3
912
Normal
-0.3
756
Normal
-0.3
1022
Normal
-0.3
192
Normal
-0.3
616
Normal
-0.3
975
Tumor
-0.3
882
Normal
-0.3
976
Normal
-0.3
818
Normal
-0.3
878
Normal
-0.3
314
Normal
-0.3
546
Normal
-0.3
462
Normal
-0.3
386
Normal
-0.3
124
Normal
-0.3
268
Normal
-0.3
568
Normal
-0.3
426
Normal
-0.3
861
Tumor
-0.3
224
Normal
-0.3
518
Normal
-0.3
376
Normal
-0.3
866
Normal
-0.3
416
Normal
-0.3
572
Normal
-0.3
873
Tumor
-0.3
628
Normal
-0.3
298
Normal
-0.3
278
Normal
-0.3
1026
Normal
-0.3
232
Normal
-0.3
574
Normal
-0.3
422
Normal
-0.3
366
Normal
-0.3
884
Normal
-0.3
745
Tumor
-0.3
146
Normal
-0.3
696
Normal
-0.3
312
Normal
-0.3
384
Normal
-0.3
778
Normal
-0.3
982
Normal
-0.3
126
Normal
-0.3
852
Normal
-0.3
272
Normal
-0.3
414
Normal
-0.3
814
Normal
-0.3
956
Normal
-0.4
874
Normal
-0.4
362
Normal
-0.4
864
Normal
-0.4
494
Normal
-0.4
713
Tumor
-0.4
481
Tumor
-0.4
721
Tumor
-0.4
914
Normal
-0.4
424
Normal
-0.4
148
Normal
-0.4
162
Normal
-0.4
536
Normal
-0.4
222
Normal
-0.4
738
Normal
-0.4
327
Tumor
-0.4
816
Normal
-0.4
728
Normal
-0.4
188
Normal
-0.4
868
Normal
-0.4
138
Normal
-0.4
528
Normal
-0.4
262
Normal
-0.4
172
Normal
-0.4
186
Normal
-0.4
332
Normal
-0.4
742
Normal
-0.5
136
Normal
-0.5
214
Normal
-0.5
132
Normal
-0.5
862
Normal
-0.5
196
Normal
-0.5
558
Normal
-0.5
723
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
