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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ELOA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.1
487
Tumor
1.0
383
Tumor
0.8
951
Tumor
0.8
481
Tumor
0.7
953
Tumor
0.7
937
Tumor
0.6
883
Tumor
0.6
865
Tumor
0.6
785
Tumor
0.6
527
Tumor
0.5
484
Normal
0.5
955
Tumor
0.5
425
Tumor
0.5
497
Tumor
0.5
635
Tumor
0.5
777
Tumor
0.5
741
Tumor
0.5
161
Tumor
0.5
663
Tumor
0.5
861
Tumor
0.5
431
Tumor
0.5
727
Tumor
0.5
1013
Tumor
0.5
341
Tumor
0.5
533
Tumor
0.5
867
Tumor
0.5
1041
Tumor
0.5
473
Tumor
0.4
746
Normal
0.4
112
Tumor
0.4
944
Normal
0.4
493
Tumor
0.4
1021
Tumor
0.4
685
Tumor
0.4
714
Normal
0.4
755
Tumor
0.4
858
Normal
0.4
813
Tumor
0.4
862
Normal
0.4
737
Tumor
0.4
636
Normal
0.4
952
Normal
0.4
786
Normal
0.4
912
Normal
0.3
818
Normal
0.3
984
Normal
0.3
954
Normal
0.3
866
Normal
0.3
355
Tumor
0.3
824
Normal
0.3
391
Tumor
0.3
413
Tumor
0.3
557
Tumor
0.3
1014
Normal
0.3
387
Tumor
0.3
938
Normal
0.3
554
Normal
0.3
524
Normal
0.3
964
Normal
0.3
911
Tumor
0.3
958
Normal
0.3
661
Tumor
0.3
925
Tumor
0.3
488
Normal
0.3
698
Normal
0.3
744
Normal
0.3
534
Normal
0.3
427
Tumor
0.3
477
Tumor
0.3
222
Normal
0.3
696
Normal
0.3
968
Normal
0.3
756
Normal
0.2
498
Normal
0.2
573
Tumor
0.2
482
Normal
0.2
231
Tumor
0.2
361
Tumor
0.2
863
Tumor
0.2
472
Normal
0.2
617
Tumor
0.2
778
Normal
0.2
648
Normal
0.2
261
Tumor
0.2
298
Normal
0.2
628
Normal
0.2
966
Normal
0.2
814
Normal
0.2
666
Normal
0.2
474
Normal
0.2
462
Normal
0.2
742
Normal
0.2
977
Tumor
0.2
142
Normal
0.2
518
Normal
0.2
1016
Normal
0.2
864
Normal
0.2
922
Normal
0.2
327
Tumor
0.2
857
Tumor
0.2
123
Tumor
0.2
267
Tumor
0.2
436
Normal
0.2
672
Normal
0.2
878
Normal
0.2
882
Normal
0.2
546
Normal
0.2
647
Tumor
0.2
1032
Normal
0.2
232
Normal
0.2
913
Tumor
0.2
982
Normal
0.2
171
Tumor
0.2
525
Tumor
0.2
957
Tumor
0.2
461
Tumor
0.2
664
Normal
0.2
113
Tumor
0.2
286
Normal
0.2
981
Tumor
0.2
412
Normal
0.2
1028
Normal
0.2
384
Normal
0.2
695
Tumor
0.2
723
Tumor
0.1
568
Normal
0.1
494
Normal
0.1
528
Normal
0.1
572
Normal
0.1
433
Tumor
0.1
884
Normal
0.1
195
Tumor
0.1
823
Tumor
0.1
536
Normal
0.1
328
Normal
0.1
284
Normal
0.1
515
Tumor
0.1
918
Normal
0.1
873
Tumor
0.1
564
Normal
0.1
415
Tumor
0.1
1046
Normal
0.1
926
Normal
0.1
563
Tumor
0.1
574
Normal
0.1
728
Normal
0.1
868
Normal
0.1
618
Normal
0.1
721
Tumor
0.1
852
Normal
0.1
228
Normal
0.1
353
Tumor
0.1
956
Normal
0.1
943
Tumor
0.1
448
Normal
0.1
513
Tumor
0.1
367
Tumor
0.1
376
Normal
0.1
924
Normal
0.1
716
Normal
0.1
492
Normal
0.1
395
Tumor
0.1
722
Normal
0.1
915
Tumor
0.1
365
Tumor
0.1
445
Tumor
0.1
313
Tumor
0.1
364
Normal
0.1
196
Normal
0.1
1022
Normal
0.1
218
Normal
0.1
816
Normal
0.1
467
Tumor
0.1
446
Normal
0.1
538
Normal
0.1
662
Normal
0.1
368
Normal
0.1
686
Normal
0.1
354
Normal
0.1
615
Tumor
0.1
642
Normal
0.1
456
Normal
0.1
526
Normal
0.1
426
Normal
0.0
224
Normal
0.0
464
Normal
0.0
537
Tumor
0.0
1015
Tumor
0.0
1026
Normal
0.0
357
Tumor
0.0
137
Tumor
0.0
1044
Normal
0.0
352
Normal
0.0
283
Tumor
0.0
141
Tumor
0.0
724
Normal
0.0
468
Normal
0.0
423
Tumor
0.0
1045
Tumor
0.0
466
Normal
0.0
516
Normal
0.0
1042
Normal
0.0
558
Normal
0.0
478
Normal
0.0
351
Tumor
0.0
217
Tumor
0.0
616
Normal
0.0
874
Normal
0.0
976
Normal
0.0
214
Normal
0.0
257
Tumor
0.0
738
Normal
0.0
923
Tumor
0.0
465
Tumor
0.0
471
Tumor
0.0
452
Normal
0.0
148
Normal
0.0
385
Tumor
0.0
396
Normal
0.0
213
Tumor
0.0
627
Tumor
0.0
375
Tumor
0.0
416
Normal
0.0
978
Normal
0.0
362
Normal
-0.1
392
Normal
-0.1
262
Normal
-0.1
258
Normal
-0.1
278
Normal
-0.1
223
Tumor
-0.1
671
Tumor
-0.1
567
Tumor
-0.1
342
Normal
-0.1
114
Normal
-0.1
916
Normal
-0.1
356
Normal
-0.1
124
Normal
-0.1
514
Normal
-0.1
314
Normal
-0.1
1027
Tumor
-0.1
192
Normal
-0.1
914
Normal
-0.1
128
Normal
-0.1
443
Tumor
-0.1
535
Tumor
-0.1
366
Normal
-0.1
388
Normal
-0.1
394
Normal
-0.1
483
Tumor
-0.1
212
Normal
-0.1
697
Tumor
-0.1
491
Tumor
-0.1
967
Tumor
-0.1
963
Tumor
-0.1
132
Normal
-0.1
111
Normal
-0.1
268
Normal
-0.1
332
Normal
-0.1
311
Tumor
-0.1
422
Normal
-0.1
523
Tumor
-0.1
285
Tumor
-0.1
444
Normal
-0.1
432
Normal
-0.1
975
Tumor
-0.2
138
Normal
-0.2
428
Normal
-0.2
127
Tumor
-0.2
146
Normal
-0.2
331
Tumor
-0.2
424
Normal
-0.2
386
Normal
-0.2
411
Tumor
-0.2
272
Normal
-0.2
451
Tumor
-0.2
344
Normal
-0.2
186
Normal
-0.2
312
Normal
-0.2
571
Tumor
-0.2
665
Tumor
-0.2
983
Tumor
-0.2
434
Normal
-0.2
414
Normal
-0.2
817
Tumor
-0.2
881
Tumor
-0.2
517
Tumor
-0.2
447
Tumor
-0.2
135
Tumor
-0.2
715
Tumor
-0.2
162
Normal
-0.2
211
Tumor
-0.2
851
Tumor
-0.2
126
Normal
-0.2
136
Normal
-0.2
421
Tumor
-0.3
358
Normal
-0.3
463
Tumor
-0.3
185
Tumor
-0.3
188
Normal
-0.3
455
Tumor
-0.3
743
Tumor
-0.3
125
Tumor
-0.3
172
Normal
-0.3
277
Tumor
-0.3
297
Tumor
-0.3
131
Tumor
-0.3
435
Tumor
-0.3
1025
Tumor
-0.3
343
Tumor
-0.3
545
Tumor
-0.3
191
Tumor
-0.4
221
Tumor
-0.4
921
Tumor
-0.4
271
Tumor
-0.4
363
Tumor
-0.4
1031
Tumor
-0.4
713
Tumor
-0.5
227
Tumor
-0.5
145
Tumor
-0.5
553
Tumor
-0.5
815
Tumor
-0.5
393
Tumor
-0.5
877
Tumor
-0.5
187
Tumor
-0.6
1043
Tumor
-0.6
917
Tumor
-0.7
745
Tumor
-0.8
641
Tumor
-0.9
147
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
