MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA Brain:62.0 nTPM
GTEx:5.7 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:17.1 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.8
2586 Male, age 75, left hemisphere 67.0
1827 Male, age 72, unknown 55.2
2019 Male, age 18, unknown 50.6
2666 Male, age 74, left hemisphere 49.7
2828 Female, age 72, unknown 46.2
2219 Male, age 76, both hemispheres 41.1
1833 Male, age 53, unknown 39.1
1830 Male, age 51, unknown 38.3
1870 Female, age 42, unknown 36.4
2411 Female, age 72, unknown 33.9
Dorsal raphe nucleus
nTPM: 35.2
2298 Female, age 72, unknown 36.1
2750 Male, age 76, both hemispheres 35.8
2047 Male, age 72, unknown 35.6
1828 Male, age 53, unknown 34.5
2016 Female, age 72, unknown 34.2
Inferior colliculus
nTPM: 54.1
1848 Female, age 42, unknown 56.7
2849 Male, age 72, unknown 56.6
2097 Female, age 72, unknown 53.5
1890 Male, age 53, unknown 49.8
Median raphe nucleus
nTPM: 36.7
2220 Male, age 76, midline 36.7
Periaquaductal grey, anterior
nTPM: 55.3
2502 Female, age 75, unknown 57.5
1947 Male, age 18, unknown 56.3
1795 Male, age 51, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 48.2
1831 Male, age 72, unknown 53.9
1840 Male, age 53, unknown 52.1
2850 Male, age 76, both hemispheres 43.6
2464 Female, age 72, unknown 43.3
Periaquaductal grey, lateral
nTPM: 45.6
2053 Male, age 18, unknown 50.7
2140 Male, age 76, both hemispheres 47.3
2272 Male, age 74, both hemispheres 38.7
Pretectal area
nTPM: 62.0
1816 Male, age 51, unknown 98.8
1944 Female, age 72, unknown 87.4
1817 Female, age 42, unknown 75.8
2007 Male, age 72, unknown 73.2
1815 Male, age 53, unknown 66.3
2667 Female, age 75, unknown 54.5
2407 Male, age 75, both hemispheres 53.4
2316 Male, age 76, right hemisphere 48.4
2825 Male, age 18, unknown 45.6
2273 Male, age 74, both hemispheres 41.4
2224 Female, age 72, unknown 37.4
Red nucleus
nTPM: 43.8
2584 Male, age 75, left hemisphere 54.4
2785 Male, age 18, unknown 52.8
2588 Male, age 74, left hemisphere 49.7
2823 Male, age 76, right hemisphere 49.1
2725 Female, age 75, unknown 46.8
2503 Female, age 72, unknown 42.8
1954 Female, age 42, unknown 40.8
1865 Male, age 51, unknown 40.0
1904 Male, age 53, unknown 38.9
1821 Female, age 72, unknown 37.8
2227 Male, age 72, unknown 37.2
2769 Male, age 72, unknown 35.0
Substantia nigra
nTPM: 43.0
1889 Female, age 72, unknown 60.5
1941 Male, age 53, unknown 54.1
2665 Male, age 74, both hemispheres 53.6
2583 Male, age 75, right hemisphere 48.6
2590 Female, age 75, unknown 48.6
2409 Female, age 72, unknown 35.0
1916 Female, age 42, unknown 34.3
1851 Male, age 51, unknown 33.9
2241 Male, age 72, unknown 33.6
2699 Male, age 18, unknown 28.2
Superior colliculus
nTPM: 57.0
2087 Female, age 72, unknown 76.1
2261 Male, age 18, unknown 69.0
2664 Male, age 75, both hemispheres 59.4
1796 Male, age 53, unknown 57.2
1995 Male, age 72, unknown 55.9
1895 Male, age 76, right hemisphere 54.5
1913 Female, age 42, unknown 51.9
1839 Male, age 51, unknown 50.3
2587 Male, age 74, left hemisphere 48.9
2668 Female, age 75, unknown 47.0
Ventral tegmental area
nTPM: 36.3
2218 Male, age 76, both hemispheres 40.8
1942 Male, age 51, unknown 40.1
2410 Female, age 72, unknown 38.0
2223 Female, age 72, unknown 34.3
1915 Female, age 42, unknown 32.6
2021 Male, age 53, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.7
Samples: 139

Max nTPM: 13.9
Min nTPM: 3.2
Std nTPM: 1.7
Median nTPM: 5.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 11.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 11.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 9.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 9.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 9.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 9.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 8.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 8.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 8.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.5
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.6
Sample A Female 14.8
Sample B Female 14.4
Sample C Male 15.3
Sample D Male 13.6
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 42.9
Min nTPM: 13.5
Sample A Female 14.2
Sample B Female 13.5
Sample C Male 42.9
Sample D Male 25.2
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 14.3
Min nTPM: 12.8
Sample B Female 14.2
Sample C Male 14.3
Sample D Male 12.8
Superior colliculi
nTPM: 22.5
Samples: 4

Max nTPM: 28.7
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 18.3
Sample C Male 28.7
Sample D Male 24.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 18.2
Sample C Female 18.6
Sample D Female 18.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69289123 Antisense, RP_050407_02_E01, Mouse strain C57BL/6J (56 days, male) 3.8
70795922 Antisense, RP_050712_02_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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