HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:74.7 nTPM
GTEx:9.6 nTPM
FANTOM5:81.3 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:65.8 nTPM
Allen mouse:6.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 74.7
Sample id Sample description nTPM
Hippocampus
nTPM: 61.6
1898 Male, age 80, left hemisphere 75.5
2621 Female, age 67, right hemisphere 67.8
2148 Female, age 91, left hemisphere 65.2
1911 Female, age 85, right hemisphere 60.6
1855 Male, age 76, left hemisphere 52.7
2529 Female, age 94, left hemisphere 48.0
Dentate gyrus
nTPM: 61.5
1927 Female, age 91, both hemispheres 82.7
2010 Male, age 76, both hemispheres 62.9
2531 Female, age 67, both hemispheres 61.6
2246 Female, age 85, both hemispheres 61.3
2530 Female, age 94, left hemisphere 52.5
2528 Male, age 74, both hemispheres 47.7
Entorhinal gyrus
nTPM: 73.8
2613 Female, age 94, left hemisphere 98.0
1938 Female, age 85, left hemisphere 89.0
2764 Male, age 80, right hemisphere 73.7
1787 Male, age 76, left hemisphere 65.8
2686 Male, age 75, right hemisphere 64.3
2117 Female, age 91, right hemisphere 52.2
Hippocampus, CA1
nTPM: 74.6
2749 Male, age 80, left hemisphere 141.0
1873 Female, age 85, both hemispheres 71.7
2527 Male, age 74, both hemispheres 62.9
2045 Male, age 76, both hemispheres 51.3
2082 Female, age 91, right hemisphere 46.4
Hippocampus, CA2
nTPM: 60.7
1963 Male, age 80, left hemisphere 80.8
1892 Male, age 76, both hemispheres 75.9
2437 Female, age 94, left hemisphere 63.1
2249 Male, age 74, both hemispheres 49.1
2113 Female, age 91, right hemisphere 48.4
1940 Female, age 85, left hemisphere 47.0
Hippocampus, CA3
nTPM: 74.7
2137 Male, age 80, left hemisphere 125.6
1867 Male, age 76, both hemispheres 75.8
2620 Female, age 94, left hemisphere 71.4
1891 Female, age 85, both hemispheres 64.0
2861 Female, age 67, both hemispheres 63.0
2436 Male, age 74, both hemispheres 48.3
Parahippocampal cortex
nTPM: 68.5
1990 Female, age 91, right hemisphere 81.0
1850 Male, age 80, both hemispheres 78.6
2532 Female, age 72, left hemisphere 71.1
2245 Female, age 91, both hemispheres 70.4
1933 Female, age 85, both hemispheres 68.2
2622 Female, age 67, right hemisphere 68.1
2250 Female, age 67, right hemisphere 66.7
2693 Female, age 94, both hemispheres 66.2
2692 Male, age 74, both hemispheres 64.8
2018 Male, age 76, both hemispheres 49.8
Perirhinal gyrus
nTPM: 71.5
1847 Female, age 91, left hemisphere 91.0
1841 Female, age 85, right hemisphere 73.1
1794 Male, age 80, right hemisphere 69.6
2521 Female, age 94, right hemisphere 69.0
2848 Male, age 76, right hemisphere 55.1
Subiculum
nTPM: 67.3
1901 Male, age 80, both hemispheres 86.0
1977 Female, age 85, both hemispheres 76.4
2438 Female, age 94, left hemisphere 75.4
2619 Male, age 74, both hemispheres 62.3
2042 Male, age 76, both hemispheres 55.3
2729 Female, age 91, right hemisphere 48.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 9.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.6
Samples: 197

Max nTPM: 26.4
Min nTPM: 3.5
Std nTPM: 4.0
Median nTPM: 8.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 26.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 23.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 22.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 21.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 21.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 20.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 20.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 18.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 18.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 18.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 17.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 81.3
FF:10169-103B7 60 years, female 87.2
FF:10153-102I9 76 years, female 75.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 47.2
Pig sample Sample description nTPM
Subiculum
nTPM: 37.4
Samples: 4

Max nTPM: 51.6
Min nTPM: 29.9
Sample A Female 51.6
Sample B Female 31.2
Sample C Male 36.8
Sample D Male 29.9
Dorsal hippocampus
nTPM: 39.4
Samples: 4

Max nTPM: 43.8
Min nTPM: 32.4
Sample A Female 43.8
Sample B Female 39.6
Sample C Male 41.7
Sample D Male 32.4
Entorhinal cortex
nTPM: 47.2
Samples: 4

Max nTPM: 50.1
Min nTPM: 43.0
Sample A Female 49.8
Sample B Female 45.9
Sample C Male 43.0
Sample D Male 50.1
Ventral hippocampus
nTPM: 35.8
Samples: 4

Max nTPM: 48.9
Min nTPM: 25.2
Sample A Female 30.0
Sample B Female 25.2
Sample C Male 38.9
Sample D Male 48.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 65.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.8
Samples: 4

Max nTPM: 71.3
Min nTPM: 60.9
Sample A Male 64.1
Sample B Male 66.8
Sample C Female 60.9
Sample D Female 71.3
Hippocampal formation
nTPM: 59.5
Samples: 4

Max nTPM: 68.3
Min nTPM: 51.2
Sample A Male 53.8
Sample B Male 64.5
Sample C Female 68.3
Sample D Female 51.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
69289123 Antisense, RP_050407_02_E01, Mouse strain C57BL/6J (56 days, male) 12.9
70795922 Antisense, RP_050712_02_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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