We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NISCH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NISCH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
0.6
1025
Tumor
0.5
257
Tumor
0.5
617
Tumor
0.5
445
Tumor
0.5
271
Tumor
0.5
285
Tumor
0.5
1044
Normal
0.4
523
Tumor
0.4
231
Tumor
0.4
313
Tumor
0.4
435
Tumor
0.4
975
Tumor
0.4
984
Normal
0.4
817
Tumor
0.4
221
Tumor
0.4
343
Tumor
0.4
738
Normal
0.4
755
Tumor
0.4
741
Tumor
0.3
723
Tumor
0.3
615
Tumor
0.3
863
Tumor
0.3
912
Normal
0.3
553
Tumor
0.3
331
Tumor
0.3
742
Normal
0.3
884
Normal
0.3
455
Tumor
0.3
744
Normal
0.3
386
Normal
0.3
745
Tumor
0.3
641
Tumor
0.3
482
Normal
0.3
135
Tumor
0.3
627
Tumor
0.3
517
Tumor
0.3
364
Normal
0.3
394
Normal
0.3
874
Normal
0.3
1027
Tumor
0.3
728
Normal
0.3
957
Tumor
0.3
147
Tumor
0.2
391
Tumor
0.2
862
Normal
0.2
1043
Tumor
0.2
878
Normal
0.2
132
Normal
0.2
283
Tumor
0.2
982
Normal
0.2
537
Tumor
0.2
332
Normal
0.2
952
Normal
0.2
881
Tumor
0.2
882
Normal
0.2
956
Normal
0.2
642
Normal
0.2
938
Normal
0.2
746
Normal
0.2
978
Normal
0.2
1032
Normal
0.2
636
Normal
0.2
1022
Normal
0.2
1046
Normal
0.2
983
Tumor
0.2
756
Normal
0.2
868
Normal
0.2
513
Tumor
0.2
314
Normal
0.2
261
Tumor
0.2
914
Normal
0.2
351
Tumor
0.2
185
Tumor
0.2
388
Normal
0.2
376
Normal
0.2
421
Tumor
0.2
491
Tumor
0.2
1045
Tumor
0.2
883
Tumor
0.2
877
Tumor
0.2
852
Normal
0.2
618
Normal
0.2
436
Normal
0.2
1013
Tumor
0.2
1014
Normal
0.2
824
Normal
0.2
963
Tumor
0.2
416
Normal
0.2
356
Normal
0.2
1031
Tumor
0.1
616
Normal
0.1
955
Tumor
0.1
462
Normal
0.1
866
Normal
0.1
944
Normal
0.1
146
Normal
0.1
818
Normal
0.1
448
Normal
0.1
685
Tumor
0.1
422
Normal
0.1
481
Tumor
0.1
384
Normal
0.1
727
Tumor
0.1
223
Tumor
0.1
286
Normal
0.1
546
Normal
0.1
498
Normal
0.1
628
Normal
0.1
142
Normal
0.1
432
Normal
0.1
661
Tumor
0.1
954
Normal
0.1
478
Normal
0.1
214
Normal
0.1
284
Normal
0.1
778
Normal
0.1
1016
Normal
0.1
473
Tumor
0.1
786
Normal
0.1
563
Tumor
0.1
976
Normal
0.1
865
Tumor
0.1
1041
Tumor
0.1
1026
Normal
0.1
823
Tumor
0.1
514
Normal
0.1
344
Normal
0.1
212
Normal
0.1
672
Normal
0.1
785
Tumor
0.1
671
Tumor
0.1
864
Normal
0.1
816
Normal
0.1
131
Tumor
0.1
1015
Tumor
0.1
138
Normal
0.1
187
Tumor
0.1
858
Normal
0.1
737
Tumor
0.1
396
Normal
0.1
162
Normal
0.1
361
Tumor
0.1
358
Normal
0.1
943
Tumor
0.1
648
Normal
0.1
918
Normal
0.1
964
Normal
0.1
916
Normal
0.1
171
Tumor
0.1
926
Normal
0.1
1028
Normal
0.1
456
Normal
0.1
161
Tumor
0.1
415
Tumor
0.1
443
Tumor
0.1
328
Normal
0.1
125
Tumor
0.1
698
Normal
0.1
172
Normal
0.1
414
Normal
0.1
538
Normal
0.1
965
Tumor
0.1
534
Normal
0.1
535
Tumor
0.1
635
Tumor
0.1
1042
Normal
0.0
375
Tumor
0.0
714
Normal
0.0
466
Normal
0.0
851
Tumor
0.0
471
Tumor
0.0
484
Normal
0.0
958
Normal
0.0
341
Tumor
0.0
715
Tumor
0.0
536
Normal
0.0
222
Normal
0.0
352
Normal
0.0
392
Normal
0.0
524
Normal
0.0
433
Tumor
0.0
573
Tumor
0.0
574
Normal
0.0
224
Normal
0.0
342
Normal
0.0
425
Tumor
0.0
354
Normal
0.0
516
Normal
0.0
366
Normal
0.0
568
Normal
0.0
472
Normal
0.0
272
Normal
0.0
515
Tumor
0.0
434
Normal
0.0
572
Normal
0.0
192
Normal
0.0
228
Normal
0.0
477
Tumor
0.0
951
Tumor
0.0
355
Tumor
0.0
968
Normal
0.0
126
Normal
0.0
385
Tumor
0.0
494
Normal
0.0
721
Tumor
0.0
278
Normal
0.0
873
Tumor
0.0
526
Normal
0.0
444
Normal
0.0
357
Tumor
0.0
664
Normal
0.0
558
Normal
0.0
696
Normal
0.0
232
Normal
0.0
363
Tumor
0.0
127
Tumor
0.0
137
Tumor
0.0
867
Tumor
0.0
298
Normal
0.0
186
Normal
0.0
218
Normal
0.0
112
Tumor
0.0
136
Normal
0.0
487
Tumor
0.0
262
Normal
0.0
695
Tumor
0.0
312
Normal
0.0
428
Normal
0.0
518
Normal
0.0
431
Tumor
0.0
922
Normal
0.0
446
Normal
0.0
966
Normal
0.0
813
Tumor
0.0
368
Normal
0.0
861
Tumor
0.0
921
Tumor
0.0
227
Tumor
0.0
258
Normal
0.0
424
Normal
0.0
666
Normal
-0.1
426
Normal
-0.1
716
Normal
-0.1
528
Normal
-0.1
148
Normal
-0.1
327
Tumor
-0.1
463
Tumor
-0.1
722
Normal
-0.1
777
Tumor
-0.1
387
Tumor
-0.1
663
Tumor
-0.1
464
Normal
-0.1
488
Normal
-0.1
268
Normal
-0.1
662
Normal
-0.1
188
Normal
-0.1
452
Normal
-0.1
483
Tumor
-0.1
467
Tumor
-0.1
145
Tumor
-0.1
365
Tumor
-0.1
196
Normal
-0.1
981
Tumor
-0.1
1021
Tumor
-0.1
367
Tumor
-0.1
353
Tumor
-0.1
311
Tumor
-0.1
977
Tumor
-0.1
217
Tumor
-0.1
111
Normal
-0.1
953
Tumor
-0.1
492
Normal
-0.1
647
Tumor
-0.1
686
Normal
-0.1
924
Normal
-0.1
114
Normal
-0.1
564
Normal
-0.1
468
Normal
-0.1
743
Tumor
-0.1
393
Tumor
-0.1
211
Tumor
-0.1
277
Tumor
-0.1
925
Tumor
-0.1
113
Tumor
-0.1
362
Normal
-0.2
967
Tumor
-0.2
297
Tumor
-0.2
913
Tumor
-0.2
267
Tumor
-0.2
554
Normal
-0.2
412
Normal
-0.2
474
Normal
-0.2
814
Normal
-0.2
911
Tumor
-0.2
383
Tumor
-0.2
128
Normal
-0.2
124
Normal
-0.2
557
Tumor
-0.2
533
Tumor
-0.2
213
Tumor
-0.2
461
Tumor
-0.2
571
Tumor
-0.2
665
Tumor
-0.2
917
Tumor
-0.2
395
Tumor
-0.2
141
Tumor
-0.2
447
Tumor
-0.3
545
Tumor
-0.3
857
Tumor
-0.3
915
Tumor
-0.3
525
Tumor
-0.3
697
Tumor
-0.3
451
Tumor
-0.3
413
Tumor
-0.3
713
Tumor
-0.3
191
Tumor
-0.3
493
Tumor
-0.3
527
Tumor
-0.3
411
Tumor
-0.3
497
Tumor
-0.3
195
Tumor
-0.3
423
Tumor
-0.4
427
Tumor
-0.4
923
Tumor
-0.4
567
Tumor
-0.4
724
Normal
-0.4
937
Tumor
-0.5
465
Tumor
-0.5
123
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
