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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD3NL is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
57.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD3NL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
1.2
743
Tumor
0.9
661
Tumor
0.9
672
Normal
0.8
535
Tumor
0.8
536
Normal
0.7
354
Normal
0.7
823
Tumor
0.7
455
Tumor
0.7
211
Tumor
0.7
283
Tumor
0.7
978
Normal
0.7
514
Normal
0.6
343
Tumor
0.6
524
Normal
0.6
362
Normal
0.6
367
Tumor
0.6
526
Normal
0.6
573
Tumor
0.6
697
Tumor
0.6
297
Tumor
0.6
642
Normal
0.6
491
Tumor
0.6
741
Tumor
0.6
528
Normal
0.6
516
Normal
0.6
685
Tumor
0.5
1015
Tumor
0.5
186
Normal
0.5
664
Normal
0.5
666
Normal
0.5
353
Tumor
0.5
213
Tumor
0.5
268
Normal
0.5
447
Tumor
0.5
983
Tumor
0.5
351
Tumor
0.5
188
Normal
0.5
636
Normal
0.5
352
Normal
0.5
525
Tumor
0.5
126
Normal
0.5
814
Normal
0.5
916
Normal
0.5
954
Normal
0.5
518
Normal
0.5
366
Normal
0.5
728
Normal
0.5
533
Tumor
0.5
537
Tumor
0.4
913
Tumor
0.4
368
Normal
0.4
124
Normal
0.4
817
Tumor
0.4
527
Tumor
0.4
742
Normal
0.4
517
Tumor
0.4
538
Normal
0.4
554
Normal
0.4
128
Normal
0.4
217
Tumor
0.4
744
Normal
0.4
146
Normal
0.4
478
Normal
0.4
563
Tumor
0.4
628
Normal
0.4
467
Tumor
0.4
331
Tumor
0.4
824
Normal
0.4
546
Normal
0.4
662
Normal
0.4
618
Normal
0.4
1046
Normal
0.4
384
Normal
0.4
984
Normal
0.3
232
Normal
0.3
344
Normal
0.3
965
Tumor
0.3
192
Normal
0.3
227
Tumor
0.3
715
Tumor
0.3
963
Tumor
0.3
142
Normal
0.3
968
Normal
0.3
391
Tumor
0.3
1025
Tumor
0.3
737
Tumor
0.3
313
Tumor
0.3
271
Tumor
0.3
1016
Normal
0.3
616
Normal
0.3
713
Tumor
0.3
943
Tumor
0.3
136
Normal
0.3
272
Normal
0.3
145
Tumor
0.3
816
Normal
0.3
686
Normal
0.3
696
Normal
0.3
111
Normal
0.3
917
Tumor
0.3
1014
Normal
0.3
191
Tumor
0.3
434
Normal
0.3
958
Normal
0.3
138
Normal
0.3
648
Normal
0.3
858
Normal
0.3
132
Normal
0.3
172
Normal
0.3
925
Tumor
0.3
358
Normal
0.3
953
Tumor
0.3
341
Tumor
0.3
722
Normal
0.3
385
Tumor
0.3
852
Normal
0.2
966
Normal
0.2
1042
Normal
0.2
956
Normal
0.2
914
Normal
0.2
818
Normal
0.2
813
Tumor
0.2
574
Normal
0.2
545
Tumor
0.2
421
Tumor
0.2
162
Normal
0.2
976
Normal
0.2
218
Normal
0.2
635
Tumor
0.2
137
Tumor
0.2
926
Normal
0.2
464
Normal
0.2
786
Normal
0.2
617
Tumor
0.2
716
Normal
0.2
513
Tumor
0.2
395
Tumor
0.2
387
Tumor
0.2
738
Normal
0.2
964
Normal
0.2
114
Normal
0.2
851
Tumor
0.2
125
Tumor
0.2
1028
Normal
0.2
723
Tumor
0.2
396
Normal
0.2
714
Normal
0.2
123
Tumor
0.2
727
Tumor
0.2
756
Normal
0.2
815
Tumor
0.2
967
Tumor
0.1
534
Normal
0.1
778
Normal
0.1
918
Normal
0.1
432
Normal
0.1
627
Tumor
0.1
148
Normal
0.1
952
Normal
0.1
558
Normal
0.1
785
Tumor
0.1
483
Tumor
0.1
394
Normal
0.1
392
Normal
0.1
671
Tumor
0.1
185
Tumor
0.1
456
Normal
0.1
361
Tumor
0.1
277
Tumor
0.1
311
Tumor
0.1
615
Tumor
0.1
884
Normal
0.1
1044
Normal
0.1
494
Normal
0.1
428
Normal
0.1
127
Tumor
0.1
383
Tumor
0.1
724
Normal
0.1
1027
Tumor
0.1
422
Normal
0.1
262
Normal
0.1
223
Tumor
0.1
641
Tumor
0.1
468
Normal
0.1
745
Tumor
0.1
1021
Tumor
0.1
877
Tumor
0.1
975
Tumor
0.1
222
Normal
0.1
424
Normal
0.1
135
Tumor
0.1
258
Normal
0.1
285
Tumor
0.1
944
Normal
0.1
187
Tumor
0.1
376
Normal
0.1
388
Normal
0.1
131
Tumor
0.1
955
Tumor
0.0
647
Tumor
0.0
414
Normal
0.0
922
Normal
0.0
444
Normal
0.0
857
Tumor
0.0
492
Normal
0.0
572
Normal
0.0
413
Tumor
0.0
365
Tumor
0.0
448
Normal
0.0
212
Normal
0.0
1022
Normal
0.0
487
Tumor
0.0
924
Normal
0.0
1026
Normal
0.0
923
Tumor
0.0
461
Tumor
0.0
488
Normal
0.0
498
Normal
0.0
568
Normal
0.0
386
Normal
0.0
564
Normal
0.0
874
Normal
0.0
477
Tumor
0.0
912
Normal
0.0
342
Normal
0.0
452
Normal
0.0
445
Tumor
-0.1
746
Normal
-0.1
915
Tumor
-0.1
147
Tumor
-0.1
881
Tumor
-0.1
721
Tumor
-0.1
1032
Normal
-0.1
141
Tumor
-0.1
195
Tumor
-0.1
423
Tumor
-0.1
474
Normal
-0.1
938
Normal
-0.1
484
Normal
-0.1
214
Normal
-0.1
557
Tumor
-0.1
867
Tumor
-0.1
473
Tumor
-0.1
113
Tumor
-0.1
451
Tumor
-0.1
426
Normal
-0.1
882
Normal
-0.1
171
Tumor
-0.1
1013
Tumor
-0.1
911
Tumor
-0.1
446
Normal
-0.1
462
Normal
-0.1
777
Tumor
-0.1
471
Tumor
-0.1
493
Tumor
-0.1
755
Tumor
-0.1
427
Tumor
-0.1
472
Normal
-0.1
466
Normal
-0.2
515
Tumor
-0.2
957
Tumor
-0.2
161
Tumor
-0.2
433
Tumor
-0.2
224
Normal
-0.2
267
Tumor
-0.2
482
Normal
-0.2
982
Normal
-0.2
463
Tumor
-0.2
375
Tumor
-0.2
497
Tumor
-0.2
663
Tumor
-0.2
1041
Tumor
-0.3
862
Normal
-0.3
553
Tumor
-0.3
393
Tumor
-0.3
443
Tumor
-0.3
221
Tumor
-0.3
431
Tumor
-0.3
878
Normal
-0.3
196
Normal
-0.3
425
Tumor
-0.3
864
Normal
-0.3
523
Tumor
-0.3
436
Normal
-0.3
1045
Tumor
-0.3
284
Normal
-0.3
698
Normal
-0.3
567
Tumor
-0.3
312
Normal
-0.3
435
Tumor
-0.3
278
Normal
-0.3
1031
Tumor
-0.3
883
Tumor
-0.4
257
Tumor
-0.4
868
Normal
-0.4
298
Normal
-0.4
1043
Tumor
-0.4
357
Tumor
-0.5
571
Tumor
-0.5
863
Tumor
-0.5
261
Tumor
-0.5
977
Tumor
-0.5
981
Tumor
-0.5
866
Normal
-0.5
861
Tumor
-0.6
286
Normal
-0.6
228
Normal
-0.7
112
Tumor
-0.7
951
Tumor
-0.7
695
Tumor
-0.8
937
Tumor
-0.8
332
Normal
-0.8
481
Tumor
-0.8
465
Tumor
-0.9
921
Tumor
-1.0
873
Tumor
-1.0
314
Normal
-1.1
231
Tumor
-1.2
865
Tumor
-1.2
355
Tumor
N/A
356
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
