We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RANBP9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RANBP9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO50817
0 years, male, NA, stage:2, alive, 390 days
63.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
62.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
0.9
553
Tumor
0.8
491
Tumor
0.8
343
Tumor
0.7
355
Tumor
0.7
1013
Tumor
0.7
573
Tumor
0.6
283
Tumor
0.6
1025
Tumor
0.6
497
Tumor
0.6
125
Tumor
0.5
817
Tumor
0.5
923
Tumor
0.5
865
Tumor
0.5
285
Tumor
0.5
411
Tumor
0.5
277
Tumor
0.5
745
Tumor
0.5
977
Tumor
0.5
463
Tumor
0.5
571
Tumor
0.5
663
Tumor
0.5
957
Tumor
0.5
743
Tumor
0.5
517
Tumor
0.5
697
Tumor
0.5
983
Tumor
0.5
493
Tumor
0.5
131
Tumor
0.5
271
Tumor
0.4
823
Tumor
0.4
671
Tumor
0.4
953
Tumor
0.4
213
Tumor
0.4
257
Tumor
0.4
357
Tumor
0.4
443
Tumor
0.4
231
Tumor
0.4
221
Tumor
0.4
161
Tumor
0.4
713
Tumor
0.4
375
Tumor
0.4
313
Tumor
0.4
951
Tumor
0.3
467
Tumor
0.3
917
Tumor
0.3
1031
Tumor
0.3
387
Tumor
0.3
351
Tumor
0.3
211
Tumor
0.3
227
Tumor
0.3
473
Tumor
0.3
391
Tumor
0.3
147
Tumor
0.3
311
Tumor
0.3
331
Tumor
0.3
641
Tumor
0.3
537
Tumor
0.3
1043
Tumor
0.3
367
Tumor
0.3
385
Tumor
0.3
1027
Tumor
0.3
545
Tumor
0.2
647
Tumor
0.2
455
Tumor
0.2
661
Tumor
0.2
433
Tumor
0.2
921
Tumor
0.2
943
Tumor
0.2
965
Tumor
0.2
567
Tumor
0.2
724
Normal
0.2
383
Tumor
0.2
777
Tumor
0.2
425
Tumor
0.2
487
Tumor
0.2
353
Tumor
0.2
967
Tumor
0.2
191
Tumor
0.2
535
Tumor
0.2
861
Tumor
0.2
217
Tumor
0.2
685
Tumor
0.2
427
Tumor
0.2
431
Tumor
0.2
185
Tumor
0.2
527
Tumor
0.2
533
Tumor
0.2
188
Normal
0.2
361
Tumor
0.1
393
Tumor
0.1
525
Tumor
0.1
557
Tumor
0.1
127
Tumor
0.1
975
Tumor
0.1
914
Normal
0.1
297
Tumor
0.1
465
Tumor
0.1
123
Tumor
0.1
445
Tumor
0.1
447
Tumor
0.1
135
Tumor
0.1
327
Tumor
0.1
695
Tumor
0.1
881
Tumor
0.1
721
Tumor
0.1
363
Tumor
0.1
523
Tumor
0.1
925
Tumor
0.1
715
Tumor
0.1
665
Tumor
0.1
513
Tumor
0.1
1021
Tumor
0.1
421
Tumor
0.1
141
Tumor
0.1
563
Tumor
0.1
413
Tumor
0.1
536
Normal
0.1
286
Normal
0.0
863
Tumor
0.0
368
Normal
0.0
224
Normal
0.0
261
Tumor
0.0
137
Tumor
0.0
112
Tumor
0.0
515
Tumor
0.0
737
Tumor
0.0
187
Tumor
0.0
195
Tumor
0.0
1015
Tumor
0.0
394
Normal
0.0
478
Normal
0.0
785
Tumor
0.0
384
Normal
0.0
423
Tumor
0.0
396
Normal
0.0
741
Tumor
0.0
518
Normal
0.0
461
Tumor
0.0
963
Tumor
0.0
526
Normal
0.0
1041
Tumor
0.0
223
Tumor
0.0
434
Normal
0.0
395
Tumor
0.0
388
Normal
0.0
162
Normal
0.0
471
Tumor
0.0
386
Normal
0.0
723
Tumor
0.0
365
Tumor
0.0
186
Normal
0.0
666
Normal
0.0
913
Tumor
0.0
451
Tumor
-0.1
572
Normal
-0.1
498
Normal
-0.1
332
Normal
-0.1
341
Tumor
-0.1
284
Normal
-0.1
883
Tumor
-0.1
428
Normal
-0.1
212
Normal
-0.1
446
Normal
-0.1
392
Normal
-0.1
976
Normal
-0.1
966
Normal
-0.1
672
Normal
-0.1
432
Normal
-0.1
483
Tumor
-0.1
172
Normal
-0.1
813
Tumor
-0.1
444
Normal
-0.1
524
Normal
-0.1
354
Normal
-0.1
481
Tumor
-0.1
648
Normal
-0.1
635
Tumor
-0.1
312
Normal
-0.1
415
Tumor
-0.1
228
Normal
-0.1
492
Normal
-0.1
554
Normal
-0.1
436
Normal
-0.1
468
Normal
-0.1
464
Normal
-0.1
534
Normal
-0.1
558
Normal
-0.1
937
Tumor
-0.1
744
Normal
-0.1
958
Normal
-0.1
171
Tumor
-0.1
538
Normal
-0.1
617
Tumor
-0.1
755
Tumor
-0.1
662
Normal
-0.1
366
Normal
-0.1
126
Normal
-0.1
814
Normal
-0.1
148
Normal
-0.1
564
Normal
-0.1
1028
Normal
-0.1
664
Normal
-0.1
314
Normal
-0.1
268
Normal
-0.1
915
Tumor
-0.1
912
Normal
-0.1
192
Normal
-0.1
344
Normal
-0.1
857
Tumor
-0.1
362
Normal
-0.1
916
Normal
-0.1
815
Tumor
-0.1
746
Normal
-0.2
978
Normal
-0.2
218
Normal
-0.2
145
Tumor
-0.2
924
Normal
-0.2
686
Normal
-0.2
113
Tumor
-0.2
574
Normal
-0.2
376
Normal
-0.2
926
Normal
-0.2
882
Normal
-0.2
716
Normal
-0.2
568
Normal
-0.2
196
Normal
-0.2
955
Tumor
-0.2
494
Normal
-0.2
262
Normal
-0.2
1042
Normal
-0.2
528
Normal
-0.2
136
Normal
-0.2
696
Normal
-0.2
214
Normal
-0.2
714
Normal
-0.2
778
Normal
-0.2
728
Normal
-0.2
111
Normal
-0.2
615
Tumor
-0.2
546
Normal
-0.2
722
Normal
-0.2
851
Tumor
-0.2
424
Normal
-0.2
964
Normal
-0.2
426
Normal
-0.2
516
Normal
-0.2
272
Normal
-0.2
142
Normal
-0.2
867
Tumor
-0.2
452
Normal
-0.2
488
Normal
-0.2
911
Tumor
-0.2
435
Tumor
-0.2
968
Normal
-0.2
873
Tumor
-0.2
466
Normal
-0.2
742
Normal
-0.2
738
Normal
-0.2
1016
Normal
-0.2
858
Normal
-0.2
874
Normal
-0.2
484
Normal
-0.2
514
Normal
-0.2
474
Normal
-0.2
232
Normal
-0.2
954
Normal
-0.2
258
Normal
-0.2
472
Normal
-0.2
356
Normal
-0.2
422
Normal
-0.2
138
Normal
-0.2
462
Normal
-0.2
222
Normal
-0.2
124
Normal
-0.2
352
Normal
-0.2
364
Normal
-0.2
414
Normal
-0.2
412
Normal
-0.2
146
Normal
-0.2
114
Normal
-0.3
456
Normal
-0.3
918
Normal
-0.3
482
Normal
-0.3
132
Normal
-0.3
448
Normal
-0.3
864
Normal
-0.3
1026
Normal
-0.3
922
Normal
-0.3
756
Normal
-0.3
1032
Normal
-0.3
944
Normal
-0.3
298
Normal
-0.3
956
Normal
-0.3
328
Normal
-0.3
981
Tumor
-0.3
862
Normal
-0.3
477
Tumor
-0.3
878
Normal
-0.3
938
Normal
-0.3
278
Normal
-0.3
818
Normal
-0.3
852
Normal
-0.3
816
Normal
-0.3
727
Tumor
-0.3
416
Normal
-0.3
128
Normal
-0.3
984
Normal
-0.4
952
Normal
-0.4
358
Normal
-0.4
868
Normal
-0.4
1014
Normal
-0.4
618
Normal
-0.4
884
Normal
-0.4
866
Normal
-0.4
1022
Normal
-0.4
824
Normal
-0.4
342
Normal
-0.4
627
Tumor
-0.4
642
Normal
-0.4
786
Normal
-0.4
628
Normal
-0.4
616
Normal
-0.5
982
Normal
-0.5
636
Normal
-0.5
1044
Normal
-0.5
1046
Normal
-0.6
267
Tumor
-0.7
1045
Tumor
-0.7
698
Normal
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
