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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPAG9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPAG9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
231
Samples
Sample
Description
TPM
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.0
953
Tumor
1.0
357
Tumor
0.8
981
Tumor
0.7
1013
Tumor
0.6
487
Tumor
0.5
355
Tumor
0.5
663
Tumor
0.5
1027
Tumor
0.5
741
Tumor
0.5
411
Tumor
0.5
685
Tumor
0.4
431
Tumor
0.4
311
Tumor
0.4
465
Tumor
0.4
484
Normal
0.4
744
Normal
0.4
477
Tumor
0.4
695
Tumor
0.4
533
Tumor
0.4
815
Tumor
0.4
647
Tumor
0.3
554
Normal
0.3
353
Tumor
0.3
954
Normal
0.3
867
Tumor
0.3
488
Normal
0.3
1014
Normal
0.3
423
Tumor
0.3
851
Tumor
0.3
515
Tumor
0.3
283
Tumor
0.3
445
Tumor
0.3
257
Tumor
0.3
478
Normal
0.3
984
Normal
0.3
951
Tumor
0.3
341
Tumor
0.3
395
Tumor
0.3
498
Normal
0.3
538
Normal
0.3
924
Normal
0.3
482
Normal
0.2
536
Normal
0.2
952
Normal
0.2
297
Tumor
0.2
513
Tumor
0.2
922
Normal
0.2
746
Normal
0.2
127
Tumor
0.2
698
Normal
0.2
958
Normal
0.2
147
Tumor
0.2
448
Normal
0.2
982
Normal
0.2
342
Normal
0.2
944
Normal
0.2
883
Tumor
0.2
818
Normal
0.2
298
Normal
0.2
211
Tumor
0.2
1046
Normal
0.2
472
Normal
0.2
1026
Normal
0.2
714
Normal
0.2
968
Normal
0.2
723
Tumor
0.2
1022
Normal
0.2
964
Normal
0.2
696
Normal
0.2
966
Normal
0.2
1032
Normal
0.2
786
Normal
0.2
742
Normal
0.2
912
Normal
0.2
524
Normal
0.2
546
Normal
0.2
344
Normal
0.2
387
Tumor
0.2
926
Normal
0.2
1044
Normal
0.2
462
Normal
0.2
938
Normal
0.2
745
Tumor
0.2
738
Normal
0.1
112
Tumor
0.1
862
Normal
0.1
474
Normal
0.1
537
Tumor
0.1
567
Tumor
0.1
413
Tumor
0.1
778
Normal
0.1
525
Tumor
0.1
483
Tumor
0.1
824
Normal
0.1
918
Normal
0.1
131
Tumor
0.1
866
Normal
0.1
937
Tumor
0.1
364
Normal
0.1
528
Normal
0.1
878
Normal
0.1
443
Tumor
0.1
426
Normal
0.1
421
Tumor
0.1
481
Tumor
0.1
415
Tumor
0.1
572
Normal
0.1
222
Normal
0.1
514
Normal
0.1
518
Normal
0.1
728
Normal
0.1
1016
Normal
0.1
141
Tumor
0.1
494
Normal
0.1
868
Normal
0.1
354
Normal
0.1
672
Normal
0.1
858
Normal
0.1
534
Normal
0.1
392
Normal
0.1
978
Normal
0.1
224
Normal
0.1
861
Tumor
0.1
882
Normal
0.1
356
Normal
0.1
412
Normal
0.1
125
Tumor
0.1
648
Normal
0.1
1028
Normal
0.1
375
Tumor
0.1
686
Normal
0.1
976
Normal
0.1
278
Normal
0.1
492
Normal
0.1
722
Normal
0.1
666
Normal
0.1
516
Normal
0.1
618
Normal
0.1
491
Tumor
0.1
384
Normal
0.1
527
Tumor
0.1
435
Tumor
0.1
756
Normal
0.1
716
Normal
0.1
916
Normal
0.1
196
Normal
0.1
616
Normal
0.1
955
Tumor
0.1
124
Normal
0.1
444
Normal
0.1
563
Tumor
0.1
376
Normal
0.1
864
Normal
0.1
558
Normal
0.1
642
Normal
0.1
142
Normal
0.1
917
Tumor
0.0
228
Normal
0.0
332
Normal
0.0
192
Normal
0.0
956
Normal
0.0
132
Normal
0.0
568
Normal
0.0
162
Normal
0.0
284
Normal
0.0
743
Tumor
0.0
466
Normal
0.0
148
Normal
0.0
456
Normal
0.0
664
Normal
0.0
914
Normal
0.0
873
Tumor
0.0
983
Tumor
0.0
368
Normal
0.0
128
Normal
0.0
352
Normal
0.0
697
Tumor
0.0
436
Normal
0.0
628
Normal
0.0
468
Normal
0.0
232
Normal
0.0
627
Tumor
0.0
857
Tumor
0.0
452
Normal
0.0
427
Tumor
0.0
146
Normal
0.0
446
Normal
0.0
816
Normal
0.0
258
Normal
0.0
394
Normal
0.0
218
Normal
0.0
1043
Tumor
0.0
138
Normal
0.0
227
Tumor
N/A
396
Normal
0.0
186
Normal
0.0
358
Normal
0.0
328
Normal
0.0
641
Tumor
0.0
313
Tumor
0.0
965
Tumor
0.0
172
Normal
0.0
461
Tumor
0.0
884
Normal
0.0
1021
Tumor
0.0
925
Tumor
0.0
286
Normal
0.0
526
Normal
0.0
277
Tumor
0.0
424
Normal
0.0
977
Tumor
0.0
314
Normal
0.0
636
Normal
0.0
327
Tumor
0.0
571
Tumor
0.0
136
Normal
0.0
874
Normal
0.0
455
Tumor
0.0
574
Normal
0.0
268
Normal
0.0
943
Tumor
0.0
615
Tumor
0.0
662
Normal
0.0
388
Normal
0.0
617
Tumor
0.0
214
Normal
-0.1
366
Normal
-0.1
217
Tumor
-0.1
312
Normal
-0.1
331
Tumor
-0.1
635
Tumor
-0.1
185
Tumor
-0.1
553
Tumor
-0.1
1045
Tumor
-0.1
913
Tumor
-0.1
564
Normal
-0.1
434
Normal
-0.1
114
Normal
-0.1
428
Normal
-0.1
365
Tumor
-0.1
432
Normal
-0.1
497
Tumor
-0.1
923
Tumor
-0.1
416
Normal
-0.1
1042
Normal
-0.1
422
Normal
-0.1
1015
Tumor
-0.1
493
Tumor
-0.1
212
Normal
-0.1
471
Tumor
-0.1
386
Normal
-0.1
361
Tumor
-0.1
464
Normal
-0.1
523
Tumor
-0.1
915
Tumor
-0.1
362
Normal
-0.1
383
Tumor
-0.1
187
Tumor
-0.1
111
Normal
-0.1
414
Normal
-0.1
852
Normal
-0.1
1031
Tumor
-0.1
262
Normal
-0.1
195
Tumor
-0.1
473
Tumor
-0.1
363
Tumor
-0.1
126
Normal
-0.1
272
Normal
-0.1
447
Tumor
-0.1
161
Tumor
-0.1
755
Tumor
-0.1
188
Normal
-0.1
351
Tumor
-0.1
814
Normal
-0.1
963
Tumor
-0.2
285
Tumor
-0.2
221
Tumor
-0.2
967
Tumor
-0.2
777
Tumor
-0.2
545
Tumor
-0.2
145
Tumor
-0.2
393
Tumor
-0.2
137
Tumor
-0.2
813
Tumor
-0.2
231
Tumor
-0.2
737
Tumor
-0.2
665
Tumor
-0.2
865
Tumor
-0.2
881
Tumor
-0.2
213
Tumor
-0.2
661
Tumor
-0.2
785
Tumor
-0.2
223
Tumor
-0.2
261
Tumor
-0.2
713
Tumor
-0.3
817
Tumor
-0.3
911
Tumor
-0.3
721
Tumor
-0.3
724
Normal
-0.3
823
Tumor
-0.3
391
Tumor
-0.3
367
Tumor
-0.3
863
Tumor
-0.3
1025
Tumor
-0.3
573
Tumor
-0.3
975
Tumor
-0.3
425
Tumor
-0.3
467
Tumor
-0.3
191
Tumor
-0.3
463
Tumor
-0.3
715
Tumor
-0.3
433
Tumor
-0.3
535
Tumor
-0.4
1041
Tumor
-0.4
517
Tumor
-0.4
343
Tumor
-0.4
267
Tumor
-0.4
671
Tumor
-0.4
135
Tumor
-0.4
385
Tumor
-0.4
171
Tumor
-0.4
271
Tumor
-0.5
557
Tumor
-0.5
727
Tumor
-0.5
451
Tumor
-0.5
123
Tumor
-0.6
113
Tumor
-0.6
921
Tumor
-0.6
877
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
