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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYB561 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
94.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
79.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
67.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
52.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
52.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
41.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
41.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
25.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYB561 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
84.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
70.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
50.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
2.0
573
Tumor
1.6
497
Tumor
1.2
527
Tumor
1.0
685
Tumor
1.0
385
Tumor
1.0
965
Tumor
0.9
943
Tumor
0.9
393
Tumor
0.9
123
Tumor
0.9
663
Tumor
0.8
447
Tumor
0.8
863
Tumor
0.7
211
Tumor
0.7
395
Tumor
0.7
192
Normal
0.7
545
Tumor
0.6
665
Tumor
0.6
351
Tumor
0.6
383
Tumor
0.6
917
Tumor
0.6
451
Tumor
0.6
433
Tumor
0.5
352
Normal
0.5
572
Normal
0.5
557
Tumor
0.5
357
Tumor
0.4
494
Normal
0.4
977
Tumor
0.4
492
Normal
0.4
218
Normal
0.4
111
Normal
0.4
354
Normal
0.4
394
Normal
0.4
558
Normal
0.3
482
Normal
0.3
723
Tumor
0.3
647
Tumor
0.3
741
Tumor
0.3
567
Tumor
0.3
171
Tumor
0.3
467
Tumor
0.3
744
Normal
0.3
342
Normal
0.3
387
Tumor
0.3
384
Normal
0.3
616
Normal
0.3
344
Normal
0.2
498
Normal
0.2
491
Tumor
0.2
466
Normal
0.2
463
Tumor
0.2
213
Tumor
0.2
923
Tumor
0.2
456
Normal
0.2
461
Tumor
0.2
697
Tumor
0.2
358
Normal
0.2
391
Tumor
0.2
353
Tumor
0.2
191
Tumor
0.1
696
Normal
0.1
224
Normal
0.1
568
Normal
0.1
386
Normal
0.1
392
Normal
0.1
722
Normal
0.1
642
Normal
0.1
472
Normal
0.1
922
Normal
0.1
286
Normal
0.1
671
Tumor
0.1
742
Normal
0.1
488
Normal
0.1
957
Tumor
0.1
554
Normal
0.1
672
Normal
0.1
217
Tumor
0.1
493
Tumor
0.1
664
Normal
0.0
148
Normal
0.0
921
Tumor
0.0
564
Normal
0.0
724
Normal
0.0
967
Tumor
0.0
462
Normal
0.0
618
Normal
0.0
926
Normal
0.0
981
Tumor
0.0
574
Normal
0.0
525
Tumor
0.0
388
Normal
0.0
455
Tumor
0.0
474
Normal
0.0
214
Normal
0.0
737
Tumor
0.0
716
Normal
0.0
187
Tumor
0.0
918
Normal
0.0
484
Normal
0.0
865
Tumor
-0.1
915
Tumor
-0.1
285
Tumor
-0.1
666
Normal
-0.1
916
Normal
-0.1
464
Normal
-0.1
223
Tumor
-0.1
728
Normal
-0.1
738
Normal
-0.1
958
Normal
-0.1
964
Normal
-0.1
628
Normal
-0.1
365
Tumor
-0.1
212
Normal
-0.1
481
Tumor
-0.1
435
Tumor
-0.1
534
Normal
-0.1
228
Normal
-0.2
877
Tumor
-0.2
196
Normal
-0.2
396
Normal
-0.2
721
Tumor
-0.2
867
Tumor
-0.2
444
Normal
-0.2
924
Normal
-0.2
648
Normal
-0.2
636
Normal
-0.2
468
Normal
-0.2
1013
Tumor
-0.2
446
Normal
-0.2
963
Tumor
-0.2
436
Normal
-0.2
452
Normal
-0.2
487
Tumor
-0.2
478
Normal
-0.2
327
Tumor
-0.2
983
Tumor
-0.2
376
Normal
-0.2
284
Normal
-0.2
114
Normal
-0.2
411
Tumor
-0.2
874
Normal
-0.2
627
Tumor
-0.2
873
Tumor
-0.2
313
Tumor
-0.2
331
Tumor
-0.2
368
Normal
-0.2
222
Normal
-0.2
514
Normal
-0.3
526
Normal
-0.3
952
Normal
-0.3
277
Tumor
-0.3
864
Normal
-0.3
311
Tumor
-0.3
355
Tumor
-0.3
686
Normal
-0.3
914
Normal
-0.3
968
Normal
-0.3
662
Normal
-0.3
297
Tumor
-0.3
727
Tumor
-0.3
1015
Tumor
-0.3
523
Tumor
-0.3
878
Normal
-0.3
866
Normal
-0.3
128
Normal
-0.3
862
Normal
-0.3
937
Tumor
-0.3
966
Normal
-0.3
714
Normal
-0.3
227
Tumor
-0.3
471
Tumor
-0.3
432
Normal
-0.3
341
Tumor
-0.4
513
Tumor
-0.4
126
Normal
-0.4
516
Normal
-0.4
443
Tumor
-0.4
124
Normal
-0.4
445
Tumor
-0.4
713
Tumor
-0.4
978
Normal
-0.4
362
Normal
-0.4
518
Normal
-0.4
412
Normal
-0.4
528
Normal
-0.4
546
Normal
-0.4
366
Normal
-0.4
938
Normal
-0.4
356
Normal
-0.4
951
Tumor
-0.4
416
Normal
-0.4
434
Normal
-0.4
956
Normal
-0.4
364
Normal
-0.4
536
Normal
-0.4
975
Tumor
-0.4
953
Tumor
-0.4
617
Tumor
-0.4
186
Normal
-0.5
571
Tumor
-0.5
955
Tumor
-0.5
162
Normal
-0.5
861
Tumor
-0.5
415
Tumor
-0.5
298
Normal
-0.5
448
Normal
-0.5
125
Tumor
-0.5
1044
Normal
-0.5
283
Tumor
-0.5
881
Tumor
-0.5
221
Tumor
-0.5
635
Tumor
-0.5
868
Normal
-0.5
477
Tumor
-0.5
1014
Normal
-0.6
1016
Normal
-0.6
912
Normal
-0.6
473
Tumor
-0.6
1045
Tumor
-0.6
538
Normal
-0.6
188
Normal
-0.6
976
Normal
-0.6
615
Tumor
-0.6
328
Normal
-0.6
195
Tumor
-0.6
431
Tumor
-0.6
533
Tumor
-0.6
147
Tumor
-0.7
882
Normal
-0.7
984
Normal
-0.7
553
Tumor
-0.7
465
Tumor
-0.7
172
Normal
-0.7
563
Tumor
-0.7
361
Tumor
-0.7
113
Tumor
-0.7
982
Normal
-0.7
161
Tumor
-0.7
1046
Normal
-0.7
954
Normal
-0.8
661
Tumor
-0.8
944
Normal
-0.8
483
Tumor
-0.8
515
Tumor
-0.8
535
Tumor
-0.8
698
Normal
-0.8
695
Tumor
-0.8
363
Tumor
-0.8
925
Tumor
-0.9
715
Tumor
-0.9
884
Normal
-0.9
641
Tumor
-0.9
375
Tumor
-0.9
312
Normal
-1.0
743
Tumor
-1.0
524
Normal
-1.0
185
Tumor
-1.0
112
Tumor
-1.1
883
Tumor
-1.2
332
Normal
-1.2
913
Tumor
-1.2
517
Tumor
-1.2
278
Normal
-1.2
1043
Tumor
-1.3
367
Tumor
-1.4
537
Tumor
-1.4
314
Normal
-1.5
127
Tumor
-1.8
911
Tumor
-1.9
231
Tumor
N/A
232
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
271
Tumor
N/A
272
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
