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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
196.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
566.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
493.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
476.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
422.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
418.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
394.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
387.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
384.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
384.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
383.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
380.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
378.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
375.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
374.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
373.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
373.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
372.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
366.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
365.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
363.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
357.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
355.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
354.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
349.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
348.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
346.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
340.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
339.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
336.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
334.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
333.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
331.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
331.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
328.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
325.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
321.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
319.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
315.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
315.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
314.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
308.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
306.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
305.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
305.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
298.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
298.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
297.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
297.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
297.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
296.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
296.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
288.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
281.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
281.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
280.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
275.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
275.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
274.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
268.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
268.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
267.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
265.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
264.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
261.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
260.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
260.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
258.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
258.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
257.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
256.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
256.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
255.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
254.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
253.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
247.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
245.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
244.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
244.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
244.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
241.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
240.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
239.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
237.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
235.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
235.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
234.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
234.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
234.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
233.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
232.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
232.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
232.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
231.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
230.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
228.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
228.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
227.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
227.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
227.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
226.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
225.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
223.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
222.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
222.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
222.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
222.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
222.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
221.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
221.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
221.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
221.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
220.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
220.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
219.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
219.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
218.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
218.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
217.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
216.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
215.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
214.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
214.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
213.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
213.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
211.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
211.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
211.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
210.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
210.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
208.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
208.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
207.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
207.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
206.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
206.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
205.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
205.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
204.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
204.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
204.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
203.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
202.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
200.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
200.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
199.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
198.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
198.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
198.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
197.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
196.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
196.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
196.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
194.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
194.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
193.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
193.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
193.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
193.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
192.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
192.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
191.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
191.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
190.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
190.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
190.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
189.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
189.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
189.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
188.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
188.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
187.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
187.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
187.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
187.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
185.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
183.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
182.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
182.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
182.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
181.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
180.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
180.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
179.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
177.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
177.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
177.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
176.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
175.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
175.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
174.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
174.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
174.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
174.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
172.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
172.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
172.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
172.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
172.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
171.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
171.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
170.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
170.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
170.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
170.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
169.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
168.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
166.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
166.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
166.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
166.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
165.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
164.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
164.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
164.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
163.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
163.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
162.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
161.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
161.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
160.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
160.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
158.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
158.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
157.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
155.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
155.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
155.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
155.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
154.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
154.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
153.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
153.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
153.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
152.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
152.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
152.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
151.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
151.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
149.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
149.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
149.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
149.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
148.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
148.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
147.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
147.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
147.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
147.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
147.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
146.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
146.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
146.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
146.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
145.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
145.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
144.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
144.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
144.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
142.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
142.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
141.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
140.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
140.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
140.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
139.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
139.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
138.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
138.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
137.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
137.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
137.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
137.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
136.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
134.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
134.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
133.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
132.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
132.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
132.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
132.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
131.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
129.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
128.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
128.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
128.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
128.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
127.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
127.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
127.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
126.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
126.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
126.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
125.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
124.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
124.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
123.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
123.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
121.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
121.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
121.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
121.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
120.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
118.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
118.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
118.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
117.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
117.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
117.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
117.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
117.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
117.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
116.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
116.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
115.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
114.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
113.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
112.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
112.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
112.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
111.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
111.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
111.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
110.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
110.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
110.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
108.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
107.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
106.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
106.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
106.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
105.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
105.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
105.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
105.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
104.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
104.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
102.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
98.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
97.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
97.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
97.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
97.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
96.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
92.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
92.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
92.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
90.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
89.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
88.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
88.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
88.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
86.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
85.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
85.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
83.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
80.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
77.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
71.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
64.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
58.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
147.9
Number of samples
231
Samples
Sample
Description
TPM
DO48737
0 years, male, NA, stage:1, alive, 720 days
371.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
355.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
325.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
314.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
299.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
297.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
293.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
290.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
289.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
281.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
281.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
277.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
262.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
261.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
255.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
249.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
247.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
244.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
240.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
236.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
233.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
232.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
232.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
229.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
228.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
227.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
225.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
224.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
222.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
222.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
222.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
217.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
214.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
212.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
212.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
209.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
209.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
208.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
206.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
206.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
202.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
201.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
198.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
198.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
196.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
196.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
195.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
194.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
194.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
191.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
191.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
190.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
189.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
187.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
185.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
185.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
182.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
182.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
182.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
181.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
180.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
180.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
178.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
175.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
175.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
173.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
173.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
173.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
173.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
171.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
166.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
166.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
165.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
165.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
164.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
163.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
163.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
162.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
161.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
161.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
161.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
160.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
159.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
158.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
158.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
158.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
157.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
157.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
156.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
155.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
155.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
155.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
154.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
154.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
153.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
152.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
152.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
150.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
150.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
149.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
147.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
146.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
144.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
144.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
141.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
141.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
141.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
140.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
140.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
139.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
138.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
138.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
138.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
138.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
138.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
137.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
137.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
135.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
135.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
135.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
134.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
134.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
131.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
131.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
131.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
131.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
131.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
130.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
127.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
127.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
127.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
126.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
125.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
125.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
123.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
123.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
122.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
120.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
120.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
120.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
119.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
118.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
118.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
118.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
117.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
117.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
117.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
117.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
117.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
117.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
117.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
117.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
116.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
116.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
116.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
115.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
114.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
114.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
113.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
112.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
112.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
112.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
112.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
111.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
110.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
110.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
110.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
109.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
108.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
106.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
106.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
105.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
104.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
104.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
103.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
103.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
103.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
102.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
102.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
102.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
101.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
101.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
98.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
98.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
96.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
96.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
96.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
95.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
95.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
93.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
92.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
91.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
87.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
87.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
86.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
85.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
82.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
81.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
81.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
80.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
79.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
79.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
79.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
77.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
77.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
74.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
74.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
74.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
73.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
72.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
71.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
69.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
69.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
68.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
67.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
67.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
64.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
63.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
63.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
62.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
59.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
57.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
57.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
48.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
47.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
436
Normal
0.5
298
Normal
0.5
456
Normal
0.5
777
Tumor
0.5
432
Normal
0.5
738
Normal
0.5
278
Normal
0.5
222
Normal
0.4
196
Normal
0.4
414
Normal
0.4
723
Tumor
0.4
314
Normal
0.4
627
Tumor
0.4
342
Normal
0.4
746
Normal
0.4
616
Normal
0.4
172
Normal
0.4
353
Tumor
0.4
742
Normal
0.4
466
Normal
0.4
218
Normal
0.4
148
Normal
0.4
426
Normal
0.3
162
Normal
0.3
362
Normal
0.3
818
Normal
0.3
618
Normal
0.3
428
Normal
0.3
312
Normal
0.3
366
Normal
0.3
186
Normal
0.3
424
Normal
0.3
132
Normal
0.3
1022
Normal
0.3
648
Normal
0.3
862
Normal
0.3
313
Tumor
0.3
327
Tumor
0.3
416
Normal
0.3
376
Normal
0.3
824
Normal
0.3
882
Normal
0.3
354
Normal
0.3
358
Normal
0.3
884
Normal
0.3
615
Tumor
0.3
452
Normal
0.3
214
Normal
0.3
666
Normal
0.3
232
Normal
0.3
262
Normal
0.3
464
Normal
0.3
386
Normal
0.3
1026
Normal
0.3
728
Normal
0.3
332
Normal
0.3
698
Normal
0.3
564
Normal
0.3
878
Normal
0.3
468
Normal
0.3
912
Normal
0.3
388
Normal
0.3
952
Normal
0.3
422
Normal
0.3
258
Normal
0.3
146
Normal
0.3
128
Normal
0.3
136
Normal
0.3
446
Normal
0.3
642
Normal
0.3
756
Normal
0.3
1044
Normal
0.3
858
Normal
0.2
394
Normal
0.2
272
Normal
0.2
662
Normal
0.2
664
Normal
0.2
111
Normal
0.2
816
Normal
0.2
568
Normal
0.2
745
Tumor
0.2
188
Normal
0.2
786
Normal
0.2
864
Normal
0.2
558
Normal
0.2
714
Normal
0.2
228
Normal
0.2
286
Normal
0.2
356
Normal
0.2
368
Normal
0.2
914
Normal
0.2
448
Normal
0.2
628
Normal
0.2
434
Normal
0.2
423
Tumor
0.2
513
Tumor
0.2
572
Normal
0.2
778
Normal
0.2
114
Normal
0.2
1046
Normal
0.2
396
Normal
0.2
574
Normal
0.2
528
Normal
0.2
138
Normal
0.2
514
Normal
0.2
722
Normal
0.2
663
Tumor
0.2
755
Tumor
0.2
866
Normal
0.2
392
Normal
0.2
352
Normal
0.2
741
Tumor
0.2
412
Normal
0.2
955
Tumor
0.2
411
Tumor
0.2
515
Tumor
0.2
482
Normal
0.2
284
Normal
0.1
344
Normal
0.1
217
Tumor
0.1
966
Normal
0.1
364
Normal
0.1
127
Tumor
0.1
874
Normal
0.1
1015
Tumor
0.1
126
Normal
0.1
744
Normal
0.1
1016
Normal
0.1
534
Normal
0.1
636
Normal
0.1
978
Normal
0.1
462
Normal
0.1
147
Tumor
0.1
518
Normal
0.1
141
Tumor
0.1
964
Normal
0.1
224
Normal
0.1
716
Normal
0.1
695
Tumor
0.1
113
Tumor
0.1
365
Tumor
0.1
328
Normal
0.1
192
Normal
0.1
488
Normal
0.1
384
Normal
0.1
696
Normal
0.1
212
Normal
0.1
461
Tumor
0.1
124
Normal
0.1
852
Normal
0.1
924
Normal
0.1
484
Normal
0.1
617
Tumor
0.1
546
Normal
0.1
444
Normal
0.1
861
Tumor
0.1
1027
Tumor
0.0
953
Tumor
0.0
737
Tumor
0.0
981
Tumor
0.0
956
Normal
0.0
526
Normal
0.0
431
Tumor
0.0
1032
Normal
0.0
361
Tumor
0.0
672
Normal
0.0
494
Normal
0.0
944
Normal
0.0
451
Tumor
0.0
867
Tumor
0.0
195
Tumor
0.0
938
Normal
0.0
984
Normal
0.0
661
Tumor
0.0
268
Normal
0.0
1028
Normal
0.0
516
Normal
0.0
868
Normal
0.0
724
Normal
0.0
635
Tumor
0.0
145
Tumor
0.0
191
Tumor
0.0
573
Tumor
0.0
474
Normal
0.0
982
Normal
0.0
1042
Normal
0.0
223
Tumor
0.0
142
Normal
0.0
554
Normal
0.0
1013
Tumor
0.0
686
Normal
0.0
873
Tumor
0.0
957
Tumor
0.0
976
Normal
0.0
261
Tumor
0.0
277
Tumor
0.0
435
Tumor
0.0
185
Tumor
0.0
1021
Tumor
0.0
161
Tumor
0.0
922
Normal
0.0
213
Tumor
0.0
727
Tumor
-0.1
1014
Normal
-0.1
926
Normal
-0.1
968
Normal
-0.1
721
Tumor
-0.1
445
Tumor
-0.1
851
Tumor
-0.1
415
Tumor
-0.1
413
Tumor
-0.1
865
Tumor
-0.1
857
Tumor
-0.1
341
Tumor
-0.1
977
Tumor
-0.1
112
Tumor
-0.1
477
Tumor
-0.1
911
Tumor
-0.1
1043
Tumor
-0.1
455
Tumor
-0.1
131
Tumor
-0.1
257
Tumor
-0.1
387
Tumor
-0.1
863
Tumor
-0.1
467
Tumor
-0.1
472
Normal
-0.1
563
Tumor
-0.1
785
Tumor
-0.1
918
Normal
-0.1
363
Tumor
-0.1
925
Tumor
-0.1
814
Normal
-0.1
383
Tumor
-0.2
187
Tumor
-0.2
647
Tumor
-0.2
393
Tumor
-0.2
355
Tumor
-0.2
135
Tumor
-0.2
665
Tumor
-0.2
958
Normal
-0.2
311
Tumor
-0.2
123
Tumor
-0.2
433
Tumor
-0.2
271
Tumor
-0.2
954
Normal
-0.2
923
Tumor
-0.2
557
Tumor
-0.2
443
Tumor
-0.2
227
Tumor
-0.2
493
Tumor
-0.2
1045
Tumor
-0.2
487
Tumor
-0.2
267
Tumor
-0.2
951
Tumor
-0.2
357
Tumor
-0.2
1031
Tumor
-0.2
137
Tumor
-0.2
815
Tumor
-0.2
915
Tumor
-0.3
823
Tumor
-0.3
465
Tumor
-0.3
567
Tumor
-0.3
221
Tumor
-0.3
523
Tumor
-0.3
125
Tumor
-0.3
916
Normal
-0.3
533
Tumor
-0.3
375
Tumor
-0.3
525
Tumor
-0.3
492
Normal
-0.3
524
Normal
-0.3
427
Tumor
-0.3
685
Tumor
-0.3
385
Tumor
-0.3
351
Tumor
-0.3
367
Tumor
-0.3
571
Tumor
-0.3
483
Tumor
-0.3
883
Tumor
-0.3
447
Tumor
-0.3
421
Tumor
-0.3
481
Tumor
-0.3
641
Tumor
-0.3
913
Tumor
-0.3
171
Tumor
-0.3
498
Normal
-0.3
813
Tumor
-0.4
715
Tumor
-0.4
231
Tumor
-0.4
517
Tumor
-0.4
881
Tumor
-0.4
536
Normal
-0.4
1025
Tumor
-0.4
983
Tumor
-0.4
497
Tumor
-0.4
538
Normal
-0.4
967
Tumor
-0.4
343
Tumor
-0.4
425
Tumor
-0.4
975
Tumor
-0.4
211
Tumor
-0.4
471
Tumor
-0.4
391
Tumor
-0.4
917
Tumor
-0.4
713
Tumor
-0.4
553
Tumor
-0.4
943
Tumor
-0.4
478
Normal
-0.4
1041
Tumor
-0.4
463
Tumor
-0.4
527
Tumor
-0.4
537
Tumor
-0.4
743
Tumor
-0.4
395
Tumor
-0.4
297
Tumor
-0.4
921
Tumor
-0.4
937
Tumor
-0.5
283
Tumor
-0.5
285
Tumor
-0.5
817
Tumor
-0.5
963
Tumor
-0.5
671
Tumor
-0.5
491
Tumor
-0.6
331
Tumor
-0.6
965
Tumor
-0.6
697
Tumor
-0.6
545
Tumor
-0.6
877
Tumor
-0.7
535
Tumor
-0.7
473
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.