We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJC11 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJC11 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
39.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.3
627
Tumor
1.0
487
Tumor
0.9
925
Tumor
0.8
465
Tumor
0.7
1027
Tumor
0.6
615
Tumor
0.5
636
Normal
0.5
231
Tumor
0.5
1045
Tumor
0.5
513
Tumor
0.5
257
Tumor
0.5
741
Tumor
0.5
423
Tumor
0.4
113
Tumor
0.4
867
Tumor
0.4
426
Normal
0.4
648
Normal
0.4
313
Tumor
0.4
953
Tumor
0.4
695
Tumor
0.4
915
Tumor
0.4
755
Tumor
0.4
491
Tumor
0.4
515
Tumor
0.4
428
Normal
0.4
818
Normal
0.4
616
Normal
0.4
564
Normal
0.4
278
Normal
0.4
446
Normal
0.3
414
Normal
0.3
618
Normal
0.3
128
Normal
0.3
824
Normal
0.3
452
Normal
0.3
746
Normal
0.3
448
Normal
0.3
171
Tumor
0.3
425
Tumor
0.3
436
Normal
0.3
394
Normal
0.3
862
Normal
0.3
883
Tumor
0.3
358
Normal
0.3
873
Tumor
0.3
813
Tumor
0.3
635
Tumor
0.3
868
Normal
0.3
628
Normal
0.3
858
Normal
0.3
298
Normal
0.3
111
Normal
0.3
361
Tumor
0.3
922
Normal
0.3
722
Normal
0.3
568
Normal
0.3
424
Normal
0.3
432
Normal
0.3
642
Normal
0.3
738
Normal
0.3
1041
Tumor
0.3
328
Normal
0.3
1046
Normal
0.3
383
Tumor
0.3
172
Normal
0.2
267
Tumor
0.2
938
Normal
0.2
518
Normal
0.2
344
Normal
0.2
866
Normal
0.2
663
Tumor
0.2
488
Normal
0.2
924
Normal
0.2
723
Tumor
0.2
944
Normal
0.2
664
Normal
0.2
698
Normal
0.2
354
Normal
0.2
232
Normal
0.2
462
Normal
0.2
954
Normal
0.2
258
Normal
0.2
572
Normal
0.2
882
Normal
0.2
422
Normal
0.2
526
Normal
0.2
356
Normal
0.2
857
Tumor
0.2
714
Normal
0.2
686
Normal
0.2
742
Normal
0.2
222
Normal
0.2
558
Normal
0.2
914
Normal
0.2
314
Normal
0.2
864
Normal
0.2
376
Normal
0.2
162
Normal
0.2
433
Tumor
0.2
874
Normal
0.2
557
Tumor
0.2
388
Normal
0.2
955
Tumor
0.2
878
Normal
0.2
666
Normal
0.2
114
Normal
0.2
132
Normal
0.2
982
Normal
0.2
431
Tumor
0.2
342
Normal
0.2
964
Normal
0.2
392
Normal
0.2
514
Normal
0.2
1015
Tumor
0.2
786
Normal
0.2
756
Normal
0.2
484
Normal
0.2
135
Tumor
0.2
728
Normal
0.2
466
Normal
0.2
196
Normal
0.2
396
Normal
0.2
527
Tumor
0.2
1016
Normal
0.2
1014
Normal
0.2
352
Normal
0.2
1026
Normal
0.2
148
Normal
0.2
227
Tumor
0.2
261
Tumor
0.2
482
Normal
0.2
567
Tumor
0.2
286
Normal
0.2
823
Tumor
0.2
327
Tumor
0.2
357
Tumor
0.2
777
Tumor
0.2
416
Normal
0.2
981
Tumor
0.2
464
Normal
0.1
534
Normal
0.1
696
Normal
0.1
365
Tumor
0.1
477
Tumor
0.1
456
Normal
0.1
138
Normal
0.1
984
Normal
0.1
573
Tumor
0.1
142
Normal
0.1
778
Normal
0.1
368
Normal
0.1
412
Normal
0.1
218
Normal
0.1
443
Tumor
0.1
884
Normal
0.1
468
Normal
0.1
472
Normal
0.1
228
Normal
0.1
727
Tumor
0.1
123
Tumor
0.1
483
Tumor
0.1
494
Normal
0.1
716
Normal
0.1
816
Normal
0.1
366
Normal
0.1
662
Normal
0.1
186
Normal
0.1
341
Tumor
0.1
1028
Normal
0.1
524
Normal
0.1
574
Normal
0.1
852
Normal
0.1
364
Normal
0.1
353
Tumor
0.1
923
Tumor
0.1
112
Tumor
0.1
926
Normal
0.1
865
Tumor
0.1
863
Tumor
0.1
332
Normal
0.1
124
Normal
0.1
745
Tumor
0.1
214
Normal
0.1
1022
Normal
0.1
125
Tumor
0.1
146
Normal
0.1
362
Normal
0.1
386
Normal
0.1
956
Normal
0.1
912
Normal
0.1
451
Tumor
0.1
427
Tumor
0.1
952
Normal
0.1
966
Normal
0.1
212
Normal
0.0
262
Normal
0.0
546
Normal
0.0
444
Normal
0.0
445
Tumor
0.0
268
Normal
0.0
474
Normal
0.0
785
Tumor
0.0
136
Normal
0.0
918
Normal
0.0
554
Normal
0.0
968
Normal
0.0
161
Tumor
0.0
481
Tumor
0.0
272
Normal
0.0
744
Normal
0.0
435
Tumor
0.0
312
Normal
0.0
525
Tumor
0.0
978
Normal
0.0
1032
Normal
0.0
461
Tumor
0.0
672
Normal
0.0
913
Tumor
0.0
516
Normal
0.0
976
Normal
0.0
224
Normal
0.0
126
Normal
0.0
528
Normal
0.0
434
Normal
0.0
185
Tumor
0.0
916
Normal
0.0
1013
Tumor
0.0
127
Tumor
0.0
697
Tumor
0.0
563
Tumor
-0.1
284
Normal
-0.1
384
Normal
-0.1
411
Tumor
-0.1
1044
Normal
-0.1
538
Normal
-0.1
958
Normal
-0.1
387
Tumor
-0.1
1042
Normal
-0.1
737
Tumor
-0.1
141
Tumor
-0.1
665
Tumor
-0.1
497
Tumor
-0.1
188
Normal
-0.1
137
Tumor
-0.2
713
Tumor
-0.2
1021
Tumor
-0.2
415
Tumor
-0.2
937
Tumor
-0.2
911
Tumor
-0.2
724
Normal
-0.2
393
Tumor
-0.2
478
Normal
-0.2
217
Tumor
-0.2
977
Tumor
-0.2
492
Normal
-0.2
951
Tumor
-0.2
375
Tumor
-0.2
533
Tumor
-0.2
814
Normal
-0.2
493
Tumor
-0.2
498
Normal
-0.2
145
Tumor
-0.3
213
Tumor
-0.3
536
Normal
-0.3
943
Tumor
-0.3
223
Tumor
-0.3
641
Tumor
-0.3
721
Tumor
-0.3
343
Tumor
-0.3
743
Tumor
-0.3
367
Tumor
-0.3
195
Tumor
-0.3
351
Tumor
-0.3
685
Tumor
-0.3
277
Tumor
-0.3
192
Normal
-0.3
861
Tumor
-0.3
963
Tumor
-0.4
395
Tumor
-0.4
413
Tumor
-0.4
967
Tumor
-0.4
191
Tumor
-0.4
851
Tumor
-0.4
297
Tumor
-0.4
421
Tumor
-0.4
187
Tumor
-0.4
535
Tumor
-0.4
447
Tumor
-0.4
363
Tumor
-0.5
661
Tumor
-0.5
815
Tumor
-0.5
385
Tumor
-0.5
221
Tumor
-0.5
523
Tumor
-0.5
473
Tumor
-0.5
983
Tumor
-0.5
715
Tumor
-0.5
271
Tumor
-0.5
455
Tumor
-0.5
283
Tumor
-0.5
647
Tumor
-0.5
331
Tumor
-0.5
517
Tumor
-0.5
147
Tumor
-0.5
1025
Tumor
-0.5
391
Tumor
-0.5
537
Tumor
-0.6
553
Tumor
-0.6
1043
Tumor
-0.6
671
Tumor
-0.6
877
Tumor
-0.6
211
Tumor
-0.6
471
Tumor
-0.6
617
Tumor
-0.7
921
Tumor
-0.7
1031
Tumor
-0.7
311
Tumor
-0.7
463
Tumor
-0.7
881
Tumor
-0.7
467
Tumor
-0.7
355
Tumor
-0.8
965
Tumor
-0.8
917
Tumor
-0.9
545
Tumor
-0.9
957
Tumor
-0.9
975
Tumor
-0.9
131
Tumor
-1.1
817
Tumor
-1.1
285
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
