We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
High
Inner nuclear layer:
High
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Not detected
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
66.8
nTPM
GTEx:
66.8
nTPM
FANTOM5:
177.5
Scaled Tags Per Million
Pig:
128.4
nTPM
Mouse:
121.4
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA030775
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB034143
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
High
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.8
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 66.8
Samples: 105
Max nTPM: 121.9
Min nTPM: 20.8
Std nTPM: 15.3
Median nTPM:
452_1
88 years, female
121.9
413_1
59 years, female
101.8
379_1
60 years, male
95.9
163_1
78 years, male
95.6
353_1
82 years, female
94.4
501_1
88 years, male
92.2
506_1
65 years, male
89.8
243_1
75 years, male
89.0
295_1
61 years, female
87.7
288_1
66 years, female
86.2
99_1
64 years, male
85.6
377_1
82 years, female
83.8
18_1
88 years, male
82.8
386_1
76 years, male
82.8
109_1
81 years, female
81.5
264_1
73 years, female
80.4
394_1
75 years, female
80.3
321_1
62 years, female
79.9
349_1
83 years, male
79.7
376_1
75 years, female
79.5
318_1
68 years, male
79.0
177_1
74 years, male
78.8
348_1
84 years, male
78.7
32_1
67 years, male
77.3
335_1
73 years, female
77.3
320_1
89 years, female
76.3
149_1
88 years, male
76.2
189_1
76 years, male
75.8
291_1
76 years, male
75.4
517_1
88 years, male
74.8
404_1
82 years, female
74.7
4_1
88 years, female
73.5
41_1
94 years, female
72.8
229_1
69 years, female
72.5
314_1
67 years, male
72.5
396_1
62 years, male
71.3
173_1
67 years, male
70.4
313_1
79 years, female
70.4
153_1
70 years, female
70.1
265_1
87 years, male
70.1
162_1
79 years, female
70.0
406_1
79 years, male
69.9
405_1
91 years, male
69.7
292_1
71 years, male
68.9
251_1
78 years, male
68.5
81_1
67 years, male
68.2
115_1
83 years, male
68.2
356_1
87 years, female
67.5
254_1
77 years, female
67.3
120_1
70 years, female
67.1
375_1
74 years, female
67.1
139_1
64 years, female
66.8
286_1
68 years, female
66.0
17_1
71 years, male
65.7
322_1
76 years, male
65.6
351_1
91 years, male
64.9
172_1
72 years, female
64.8
89_1
63 years, male
64.7
324_1
76 years, male
64.3
350_1
84 years, female
64.0
414_1
84 years, female
64.0
142_1
61 years, female
63.2
117_1
61 years, male
62.9
518_1
75 years, female
62.1
466_1
57 years, female
61.6
315_1
62 years, female
61.0
126_1
63 years, male
60.9
355_1
70 years, female
60.8
491_1
89 years, female
60.6
526_1
61 years, male
60.6
266_1
85 years, male
60.1
415_1
77 years, female
59.4
119_1
70 years, female
59.2
145_1
84 years, male
59.0
319_1
81 years, male
58.9
311_1
78 years, male
58.6
217_1
76 years, male
58.1
447_1
81 years, male
57.8
354_1
81 years, female
57.6
352_1
62 years, male
57.2
42_1
85 years, male
57.1
389_1
86 years, female
57.1
137_1
83 years, male
56.4
246_1
77 years, male
56.4
6_1
73 years, female
56.3
43_1
64 years, female
56.1
425_1
59 years, female
56.0
293_1
68 years, female
55.7
347_1
72 years, male
55.4
237_1
82 years, male
53.7
317_1
60 years, male
52.9
480_1
63 years, male
52.9
499_1
55 years, female
52.4
503_1
68 years, male
51.5
2_1
77 years, female
50.7
35_1
74 years, female
49.2
316_1
62 years, male
48.8
9_1
66 years, female
48.6
384_1
83 years, male
48.4
490_1
67 years, female
47.8
468_1
89 years, male
47.3
218_1
71 years, female
33.8
307_1
66 years, female
25.4
308_1
70 years, female
23.7
495_1
57 years, female
20.8
Show allShow less
RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
