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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ADIPOR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
90.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
67.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
58.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
53.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
47.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
43.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
39.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
36.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
36.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ADIPOR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.2
Number of samples
231
Samples
Sample
Description
TPM
DO45239
0 years, male, NA, stage:2, alive, 870 days
129.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
110.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
106.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
93.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
92.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
92.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
89.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
76.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
74.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
70.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
70.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
69.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
68.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
67.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
63.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
63.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
62.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
62.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
60.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
58.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
57.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
57.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
57.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
56.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
56.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
55.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
55.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
55.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
53.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
53.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
51.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
50.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
49.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
44.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
42.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
41.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
41.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
39.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
39.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
35.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
2.2
477
Tumor
1.9
635
Tumor
1.9
147
Tumor
1.9
523
Tumor
1.4
851
Tumor
1.4
455
Tumor
1.2
357
Tumor
1.1
567
Tumor
1.1
957
Tumor
1.0
527
Tumor
1.0
123
Tumor
0.9
445
Tumor
0.8
755
Tumor
0.8
171
Tumor
0.8
1043
Tumor
0.8
913
Tumor
0.8
647
Tumor
0.8
615
Tumor
0.7
1027
Tumor
0.7
695
Tumor
0.7
513
Tumor
0.7
515
Tumor
0.7
361
Tumor
0.7
533
Tumor
0.7
573
Tumor
0.6
365
Tumor
0.6
411
Tumor
0.6
857
Tumor
0.6
148
Normal
0.5
187
Tumor
0.5
257
Tumor
0.5
416
Normal
0.5
627
Tumor
0.5
663
Tumor
0.5
618
Normal
0.5
421
Tumor
0.5
937
Tumor
0.4
463
Tumor
0.4
425
Tumor
0.4
435
Tumor
0.4
727
Tumor
0.4
131
Tumor
0.4
862
Normal
0.4
963
Tumor
0.4
465
Tumor
0.3
873
Tumor
0.3
222
Normal
0.3
456
Normal
0.3
786
Normal
0.3
714
Normal
0.3
813
Tumor
0.3
882
Normal
0.3
267
Tumor
0.3
436
Normal
0.3
125
Tumor
0.3
777
Tumor
0.3
863
Tumor
0.3
553
Tumor
0.3
313
Tumor
0.3
914
Normal
0.3
746
Normal
0.3
745
Tumor
0.3
642
Normal
0.3
355
Tumor
0.3
883
Tumor
0.3
636
Normal
0.3
952
Normal
0.3
938
Normal
0.3
955
Tumor
0.3
484
Normal
0.3
362
Normal
0.3
376
Normal
0.3
297
Tumor
0.2
223
Tumor
0.2
737
Tumor
0.2
537
Tumor
0.2
616
Normal
0.2
713
Tumor
0.2
142
Normal
0.2
571
Tumor
0.2
277
Tumor
0.2
878
Normal
0.2
186
Normal
0.2
785
Tumor
0.2
487
Tumor
0.2
756
Normal
0.1
412
Normal
0.1
461
Tumor
0.1
967
Tumor
0.1
778
Normal
0.1
433
Tumor
0.1
196
Normal
0.1
884
Normal
0.1
342
Normal
0.1
132
Normal
0.1
146
Normal
0.1
332
Normal
0.1
272
Normal
0.1
628
Normal
0.1
915
Tumor
0.1
431
Tumor
0.1
497
Tumor
0.1
617
Tumor
0.1
366
Normal
0.1
128
Normal
0.1
923
Tumor
0.1
1026
Normal
0.1
534
Normal
0.1
314
Normal
0.1
494
Normal
0.1
262
Normal
0.1
968
Normal
0.1
482
Normal
0.1
312
Normal
0.1
1021
Tumor
0.1
258
Normal
0.0
866
Normal
0.0
428
Normal
0.0
953
Tumor
0.0
697
Tumor
0.0
368
Normal
0.0
488
Normal
0.0
341
Tumor
0.0
518
Normal
0.0
195
Tumor
0.0
136
Normal
0.0
554
Normal
0.0
298
Normal
0.0
145
Tumor
0.0
393
Tumor
0.0
685
Tumor
0.0
1045
Tumor
0.0
464
Normal
0.0
568
Normal
0.0
188
Normal
0.0
514
Normal
0.0
686
Normal
0.0
698
Normal
0.0
137
Tumor
0.0
1046
Normal
0.0
814
Normal
0.0
356
Normal
0.0
728
Normal
0.0
426
Normal
0.0
874
Normal
0.0
474
Normal
0.0
721
Tumor
-0.1
498
Normal
-0.1
462
Normal
-0.1
162
Normal
-0.1
1032
Normal
-0.1
918
Normal
-0.1
912
Normal
-0.1
557
Tumor
-0.1
744
Normal
-0.1
414
Normal
-0.1
716
Normal
-0.1
432
Normal
-0.1
422
Normal
-0.1
448
Normal
-0.1
172
Normal
-0.1
218
Normal
-0.1
111
Normal
-0.1
354
Normal
-0.1
141
Tumor
-0.1
452
Normal
-0.1
922
Normal
-0.1
278
Normal
-0.1
916
Normal
-0.1
384
Normal
-0.1
492
Normal
-0.1
472
Normal
-0.1
424
Normal
-0.1
473
Tumor
-0.1
722
Normal
-0.1
127
Tumor
-0.1
526
Normal
-0.1
228
Normal
-0.2
824
Normal
-0.2
956
Normal
-0.2
921
Tumor
-0.2
944
Normal
-0.2
311
Tumor
-0.2
138
Normal
-0.2
864
Normal
-0.2
865
Tumor
-0.2
1044
Normal
-0.2
546
Normal
-0.2
331
Tumor
-0.2
975
Tumor
-0.2
574
Normal
-0.2
268
Normal
-0.2
344
Normal
-0.2
451
Tumor
-0.2
564
Normal
-0.2
493
Tumor
-0.2
185
Tumor
-0.2
443
Tumor
-0.2
648
Normal
-0.2
375
Tumor
-0.2
415
Tumor
-0.2
483
Tumor
-0.2
741
Tumor
-0.2
964
Normal
-0.2
358
Normal
-0.2
386
Normal
-0.2
951
Tumor
-0.2
868
Normal
-0.2
1028
Normal
-0.3
742
Normal
-0.3
738
Normal
-0.3
1031
Tumor
-0.3
572
Normal
-0.3
396
Normal
-0.3
327
Tumor
-0.3
352
Normal
-0.3
1042
Normal
-0.3
926
Normal
-0.3
232
Normal
-0.3
858
Normal
-0.3
446
Normal
-0.3
212
Normal
-0.3
383
Tumor
-0.3
364
Normal
-0.3
126
Normal
-0.3
696
Normal
-0.3
1022
Normal
-0.3
524
Normal
-0.3
528
Normal
-0.3
328
Normal
-0.3
966
Normal
-0.3
924
Normal
-0.3
943
Tumor
-0.3
517
Tumor
-0.3
283
Tumor
-0.3
466
Normal
-0.3
423
Tumor
-0.3
388
Normal
-0.3
468
Normal
-0.3
723
Tumor
-0.3
231
Tumor
-0.3
367
Tumor
-0.3
285
Tumor
-0.4
191
Tumor
-0.4
353
Tumor
-0.4
114
Normal
-0.4
641
Tumor
-0.4
394
Normal
-0.4
261
Tumor
-0.4
563
Tumor
-0.4
392
Normal
-0.4
558
Normal
-0.4
965
Tumor
-0.4
976
Normal
-0.4
124
Normal
-0.4
536
Normal
-0.4
538
Normal
-0.4
391
Tumor
-0.4
816
Normal
-0.4
213
Tumor
-0.4
217
Tumor
-0.5
491
Tumor
-0.5
664
Normal
-0.5
925
Tumor
-0.5
113
Tumor
-0.5
343
Tumor
-0.5
214
Normal
-0.5
724
Normal
-0.5
434
Normal
-0.5
516
Normal
-0.5
911
Tumor
-0.5
286
Normal
-0.5
958
Normal
-0.6
481
Tumor
-0.6
954
Normal
-0.6
271
Tumor
-0.6
818
Normal
-0.6
817
Tumor
-0.6
192
Normal
-0.6
1025
Tumor
-0.6
881
Tumor
-0.6
478
Normal
-0.6
662
Normal
-0.6
545
Tumor
-0.6
351
Tumor
-0.6
852
Normal
-0.7
861
Tumor
-0.7
1041
Tumor
-0.7
743
Tumor
-0.7
666
Normal
-0.7
815
Tumor
-0.7
867
Tumor
-0.7
135
Tumor
-0.7
161
Tumor
-0.8
471
Tumor
-0.8
284
Normal
-0.8
227
Tumor
-0.8
823
Tumor
-0.8
363
Tumor
-0.8
395
Tumor
-0.8
671
Tumor
-0.8
447
Tumor
-0.8
467
Tumor
-0.8
221
Tumor
-0.8
387
Tumor
-0.8
444
Normal
-0.9
877
Tumor
-0.9
427
Tumor
-0.9
715
Tumor
-0.9
672
Normal
-1.0
917
Tumor
-1.0
661
Tumor
-1.0
525
Tumor
-1.2
535
Tumor
-1.2
224
Normal
-1.2
665
Tumor
-1.2
413
Tumor
-1.2
211
Tumor
-1.5
385
Tumor
-1.5
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.