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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS41 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
70.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
44.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS41 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
0.8
851
Tumor
0.8
1021
Tumor
0.7
1027
Tumor
0.7
123
Tumor
0.6
125
Tumor
0.6
925
Tumor
0.6
375
Tumor
0.5
257
Tumor
0.5
471
Tumor
0.5
1025
Tumor
0.5
127
Tumor
0.5
957
Tumor
0.4
211
Tumor
0.4
953
Tumor
0.4
491
Tumor
0.4
553
Tumor
0.4
473
Tumor
0.4
283
Tumor
0.4
685
Tumor
0.4
527
Tumor
0.4
367
Tumor
0.4
861
Tumor
0.4
743
Tumor
0.4
147
Tumor
0.4
697
Tumor
0.4
135
Tumor
0.3
533
Tumor
0.3
823
Tumor
0.3
271
Tumor
0.3
921
Tumor
0.3
785
Tumor
0.3
535
Tumor
0.3
1041
Tumor
0.3
431
Tumor
0.3
513
Tumor
0.3
126
Normal
0.3
483
Tumor
0.3
965
Tumor
0.3
493
Tumor
0.3
1013
Tumor
0.3
395
Tumor
0.3
627
Tumor
0.2
492
Normal
0.2
467
Tumor
0.2
721
Tumor
0.2
227
Tumor
0.2
641
Tumor
0.2
917
Tumor
0.2
124
Normal
0.2
715
Tumor
0.2
213
Tumor
0.2
187
Tumor
0.2
443
Tumor
0.2
171
Tumor
0.2
777
Tumor
0.2
713
Tumor
0.2
421
Tumor
0.2
545
Tumor
0.2
221
Tumor
0.2
313
Tumor
0.2
445
Tumor
0.2
113
Tumor
0.2
353
Tumor
0.2
361
Tumor
0.2
1031
Tumor
0.2
434
Normal
0.2
573
Tumor
0.2
1042
Normal
0.2
867
Tumor
0.2
285
Tumor
0.2
355
Tumor
0.2
615
Tumor
0.2
384
Normal
0.2
231
Tumor
0.2
524
Normal
0.2
114
Normal
0.1
563
Tumor
0.1
724
Normal
0.1
161
Tumor
0.1
536
Normal
0.1
877
Tumor
0.1
262
Normal
0.1
354
Normal
0.1
515
Tumor
0.1
911
Tumor
0.1
665
Tumor
0.1
344
Normal
0.1
916
Normal
0.1
557
Tumor
0.1
362
Normal
0.1
383
Tumor
0.1
277
Tumor
0.1
376
Normal
0.1
433
Tumor
0.1
564
Normal
0.1
755
Tumor
0.1
466
Normal
0.1
128
Normal
0.1
815
Tumor
0.1
881
Tumor
0.1
352
Normal
0.1
525
Tumor
0.1
975
Tumor
0.1
937
Tumor
0.1
188
Normal
0.1
516
Normal
0.1
913
Tumor
0.1
817
Tumor
0.1
415
Tumor
0.1
455
Tumor
0.1
468
Normal
0.1
686
Normal
0.1
366
Normal
0.1
914
Normal
0.1
145
Tumor
0.1
526
Normal
0.1
727
Tumor
0.1
966
Normal
0.1
671
Tumor
0.1
185
Tumor
0.1
341
Tumor
0.1
432
Normal
0.1
268
Normal
0.1
311
Tumor
0.1
1045
Tumor
0.1
191
Tumor
0.1
722
Normal
0.1
111
Normal
0.1
411
Tumor
0.0
218
Normal
0.0
435
Tumor
0.0
137
Tumor
0.0
423
Tumor
0.0
444
Normal
0.0
498
Normal
0.0
741
Tumor
0.0
224
Normal
0.0
983
Tumor
0.0
358
Normal
0.0
955
Tumor
0.0
456
Normal
0.0
523
Tumor
0.0
1028
Normal
0.0
661
Tumor
0.0
478
Normal
0.0
195
Tumor
0.0
217
Tumor
0.0
385
Tumor
0.0
327
Tumor
0.0
517
Tumor
0.0
918
Normal
0.0
647
Tumor
0.0
272
Normal
0.0
136
Normal
0.0
786
Normal
0.0
212
Normal
0.0
138
Normal
0.0
461
Tumor
0.0
924
Normal
0.0
391
Tumor
0.0
538
Normal
0.0
617
Tumor
0.0
954
Normal
0.0
778
Normal
0.0
357
Tumor
0.0
368
Normal
0.0
518
Normal
0.0
943
Tumor
0.0
813
Tumor
0.0
915
Tumor
0.0
967
Tumor
0.0
214
Normal
0.0
873
Tumor
0.0
451
Tumor
0.0
393
Tumor
0.0
951
Tumor
0.0
328
Normal
0.0
814
Normal
0.0
1043
Tumor
0.0
978
Normal
0.0
952
Normal
0.0
387
Tumor
0.0
926
Normal
0.0
956
Normal
0.0
481
Tumor
0.0
365
Tumor
0.0
192
Normal
0.0
1046
Normal
0.0
1015
Tumor
0.0
487
Tumor
0.0
728
Normal
0.0
297
Tumor
0.0
663
Tumor
0.0
396
Normal
0.0
142
Normal
0.0
141
Tumor
0.0
1032
Normal
0.0
554
Normal
-0.1
824
Normal
-0.1
232
Normal
-0.1
351
Tumor
-0.1
574
Normal
-0.1
364
Normal
-0.1
494
Normal
-0.1
756
Normal
-0.1
568
Normal
-0.1
132
Normal
-0.1
636
Normal
-0.1
977
Tumor
-0.1
497
Tumor
-0.1
716
Normal
-0.1
642
Normal
-0.1
1044
Normal
-0.1
261
Tumor
-0.1
474
Normal
-0.1
112
Tumor
-0.1
196
Normal
-0.1
424
Normal
-0.1
874
Normal
-0.1
146
Normal
-0.1
331
Tumor
-0.1
278
Normal
-0.1
1022
Normal
-0.1
446
Normal
-0.1
363
Tumor
-0.1
922
Normal
-0.1
477
Tumor
-0.1
737
Tumor
-0.1
883
Tumor
-0.1
558
Normal
-0.1
514
Normal
-0.1
427
Tumor
-0.1
436
Normal
-0.1
392
Normal
-0.1
416
Normal
-0.1
422
Normal
-0.1
868
Normal
-0.1
852
Normal
-0.1
571
Tumor
-0.1
567
Tumor
-0.1
258
Normal
-0.1
172
Normal
-0.1
628
Normal
-0.1
332
Normal
-0.1
222
Normal
-0.1
865
Tumor
-0.1
312
Normal
-0.1
462
Normal
-0.1
923
Tumor
-0.1
414
Normal
-0.1
267
Tumor
-0.1
482
Normal
-0.1
664
Normal
-0.1
464
Normal
-0.1
386
Normal
-0.1
1016
Normal
-0.1
298
Normal
-0.1
696
Normal
-0.1
314
Normal
-0.1
818
Normal
-0.1
863
Tumor
-0.1
884
Normal
-0.1
394
Normal
-0.1
343
Tumor
-0.1
286
Normal
-0.1
864
Normal
-0.1
723
Tumor
-0.1
742
Normal
-0.1
968
Normal
-0.1
698
Normal
-0.2
912
Normal
-0.2
465
Tumor
-0.2
472
Normal
-0.2
944
Normal
-0.2
858
Normal
-0.2
342
Normal
-0.2
746
Normal
-0.2
662
Normal
-0.2
976
Normal
-0.2
162
Normal
-0.2
672
Normal
-0.2
448
Normal
-0.2
981
Tumor
-0.2
426
Normal
-0.2
618
Normal
-0.2
984
Normal
-0.2
452
Normal
-0.2
546
Normal
-0.2
714
Normal
-0.2
528
Normal
-0.2
356
Normal
-0.2
447
Tumor
-0.2
666
Normal
-0.2
938
Normal
-0.2
1026
Normal
-0.2
186
Normal
-0.2
982
Normal
-0.2
963
Tumor
-0.2
738
Normal
-0.2
412
Normal
-0.2
223
Tumor
-0.2
1014
Normal
-0.2
131
Tumor
-0.2
284
Normal
-0.2
816
Normal
-0.2
958
Normal
-0.2
616
Normal
-0.2
572
Normal
-0.2
648
Normal
-0.2
878
Normal
-0.2
484
Normal
-0.2
744
Normal
-0.2
488
Normal
-0.2
148
Normal
-0.2
866
Normal
-0.2
857
Tumor
-0.2
964
Normal
-0.3
388
Normal
-0.3
862
Normal
-0.3
428
Normal
-0.3
534
Normal
-0.3
882
Normal
-0.3
228
Normal
-0.3
635
Tumor
-0.3
463
Tumor
-0.3
425
Tumor
-0.3
695
Tumor
-0.4
413
Tumor
-0.4
745
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
