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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGCT is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
142.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
95.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
80.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
75.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
64.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
62.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
61.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
58.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
57.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
55.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
49.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
45.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
44.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
43.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
40.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
40.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
39.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
36.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGCT is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.8
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
133.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
117.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
111.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
104.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
103.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
96.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
80.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
80.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
76.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
66.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
66.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
66.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
64.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
63.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
63.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
62.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
61.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
61.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
60.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
60.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
59.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
59.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
58.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
56.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
54.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
54.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
54.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
54.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
54.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
50.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
48.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
45.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
44.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
43.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
41.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
35.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
0.8
147
Tumor
0.8
513
Tumor
0.8
571
Tumor
0.8
1027
Tumor
0.8
777
Tumor
0.7
785
Tumor
0.7
745
Tumor
0.7
921
Tumor
0.7
911
Tumor
0.6
445
Tumor
0.6
957
Tumor
0.6
341
Tumor
0.6
685
Tumor
0.5
697
Tumor
0.5
553
Tumor
0.5
351
Tumor
0.4
1045
Tumor
0.4
411
Tumor
0.4
481
Tumor
0.4
647
Tumor
0.4
1013
Tumor
0.4
483
Tumor
0.4
741
Tumor
0.4
355
Tumor
0.4
523
Tumor
0.4
471
Tumor
0.4
435
Tumor
0.4
285
Tumor
0.4
695
Tumor
0.4
738
Normal
0.4
967
Tumor
0.4
277
Tumor
0.4
743
Tumor
0.4
125
Tumor
0.3
737
Tumor
0.3
227
Tumor
0.3
723
Tumor
0.3
951
Tumor
0.3
755
Tumor
0.3
257
Tumor
0.3
727
Tumor
0.3
137
Tumor
0.3
516
Normal
0.3
546
Normal
0.3
327
Tumor
0.3
641
Tumor
0.3
477
Tumor
0.3
123
Tumor
0.3
527
Tumor
0.3
223
Tumor
0.3
221
Tumor
0.3
627
Tumor
0.3
271
Tumor
0.2
1021
Tumor
0.2
484
Normal
0.2
881
Tumor
0.2
728
Normal
0.2
515
Tumor
0.2
746
Normal
0.2
385
Tumor
0.2
353
Tumor
0.2
742
Normal
0.2
912
Normal
0.2
131
Tumor
0.2
756
Normal
0.2
975
Tumor
0.2
261
Tumor
0.2
186
Normal
0.2
172
Normal
0.2
354
Normal
0.2
465
Tumor
0.2
862
Normal
0.2
864
Normal
0.2
956
Normal
0.2
716
Normal
0.2
724
Normal
0.2
358
Normal
0.1
868
Normal
0.1
386
Normal
0.1
617
Tumor
0.1
356
Normal
0.1
698
Normal
0.1
952
Normal
0.1
852
Normal
0.1
212
Normal
0.1
362
Normal
0.1
953
Tumor
0.1
462
Normal
0.1
958
Normal
0.1
286
Normal
0.1
915
Tumor
0.1
545
Tumor
0.1
517
Tumor
0.1
162
Normal
0.1
433
Tumor
0.1
518
Normal
0.1
534
Normal
0.1
416
Normal
0.1
722
Normal
0.1
568
Normal
0.1
744
Normal
0.1
463
Tumor
0.1
342
Normal
0.1
824
Normal
0.1
278
Normal
0.1
494
Normal
0.1
977
Tumor
0.1
452
Normal
0.1
564
Normal
0.1
816
Normal
0.1
714
Normal
0.1
1026
Normal
0.1
127
Tumor
0.1
851
Tumor
0.1
882
Normal
0.1
436
Normal
0.1
491
Tumor
0.1
431
Tumor
0.1
966
Normal
0.1
866
Normal
0.1
262
Normal
0.1
873
Tumor
0.0
422
Normal
0.0
923
Tumor
0.0
488
Normal
0.0
696
Normal
0.0
387
Tumor
0.0
574
Normal
0.0
525
Tumor
0.0
664
Normal
0.0
232
Normal
0.0
1042
Normal
0.0
965
Tumor
0.0
472
Normal
0.0
412
Normal
0.0
662
Normal
0.0
867
Tumor
0.0
313
Tumor
0.0
456
Normal
0.0
818
Normal
0.0
432
Normal
0.0
298
Normal
0.0
228
Normal
0.0
1022
Normal
0.0
128
Normal
0.0
874
Normal
0.0
514
Normal
0.0
111
Normal
0.0
884
Normal
0.0
267
Tumor
0.0
558
Normal
0.0
493
Tumor
0.0
618
Normal
0.0
686
Normal
0.0
391
Tumor
0.0
981
Tumor
0.0
332
Normal
0.0
528
Normal
0.0
468
Normal
0.0
982
Normal
0.0
924
Normal
0.0
375
Tumor
0.0
863
Tumor
0.0
663
Tumor
0.0
366
Normal
0.0
272
Normal
0.0
648
Normal
0.0
538
Normal
0.0
1016
Normal
0.0
858
Normal
0.0
563
Tumor
0.0
312
Normal
0.0
482
Normal
0.0
148
Normal
0.0
448
Normal
0.0
615
Tumor
0.0
258
Normal
0.0
284
Normal
0.0
914
Normal
0.0
616
Normal
0.0
188
Normal
0.0
393
Tumor
0.0
955
Tumor
-0.1
328
Normal
-0.1
364
Normal
-0.1
938
Normal
-0.1
1032
Normal
-0.1
984
Normal
-0.1
388
Normal
-0.1
642
Normal
-0.1
474
Normal
-0.1
666
Normal
-0.1
865
Tumor
-0.1
352
Normal
-0.1
498
Normal
-0.1
455
Tumor
-0.1
778
Normal
-0.1
878
Normal
-0.1
376
Normal
-0.1
146
Normal
-0.1
814
Normal
-0.1
196
Normal
-0.1
1044
Normal
-0.1
415
Tumor
-0.1
572
Normal
-0.1
414
Normal
-0.1
492
Normal
-0.1
943
Tumor
-0.1
466
Normal
-0.1
1014
Normal
-0.1
132
Normal
-0.1
214
Normal
-0.1
786
Normal
-0.1
817
Tumor
-0.1
1025
Tumor
-0.1
1043
Tumor
-0.1
357
Tumor
-0.1
141
Tumor
-0.1
464
Normal
-0.1
636
Normal
-0.1
344
Normal
-0.1
554
Normal
-0.1
861
Tumor
-0.1
434
Normal
-0.1
983
Tumor
-0.1
331
Tumor
-0.1
963
Tumor
-0.1
224
Normal
-0.1
978
Normal
-0.1
1031
Tumor
-0.1
268
Normal
-0.1
968
Normal
-0.1
913
Tumor
-0.1
916
Normal
-0.1
218
Normal
-0.1
138
Normal
-0.1
444
Normal
-0.1
672
Normal
-0.1
171
Tumor
-0.1
1046
Normal
-0.2
426
Normal
-0.2
1028
Normal
-0.2
671
Tumor
-0.2
363
Tumor
-0.2
944
Normal
-0.2
368
Normal
-0.2
922
Normal
-0.2
567
Tumor
-0.2
533
Tumor
-0.2
964
Normal
-0.2
918
Normal
-0.2
222
Normal
-0.2
384
Normal
-0.2
314
Normal
-0.2
926
Normal
-0.2
136
Normal
-0.2
628
Normal
-0.2
114
Normal
-0.2
365
Tumor
-0.2
392
Normal
-0.2
428
Normal
-0.2
478
Normal
-0.2
126
Normal
-0.2
925
Tumor
-0.2
635
Tumor
-0.2
394
Normal
-0.2
976
Normal
-0.2
124
Normal
-0.2
487
Tumor
-0.2
721
Tumor
-0.2
446
Normal
-0.2
815
Tumor
-0.2
524
Normal
-0.2
954
Normal
-0.2
421
Tumor
-0.2
424
Normal
-0.2
297
Tumor
-0.2
142
Normal
-0.2
443
Tumor
-0.2
1015
Tumor
-0.3
526
Normal
-0.3
713
Tumor
-0.3
367
Tumor
-0.3
361
Tumor
-0.3
185
Tumor
-0.3
813
Tumor
-0.3
425
Tumor
-0.3
231
Tumor
-0.3
283
Tumor
-0.3
451
Tumor
-0.3
396
Normal
-0.3
883
Tumor
-0.3
665
Tumor
-0.3
937
Tumor
-0.3
145
Tumor
-0.3
161
Tumor
-0.3
195
Tumor
-0.3
447
Tumor
-0.3
1041
Tumor
-0.3
413
Tumor
-0.3
573
Tumor
-0.4
557
Tumor
-0.4
135
Tumor
-0.4
857
Tumor
-0.4
213
Tumor
-0.4
535
Tumor
-0.4
112
Tumor
-0.4
497
Tumor
-0.4
423
Tumor
-0.4
536
Normal
-0.4
192
Normal
-0.4
217
Tumor
-0.4
191
Tumor
-0.4
427
Tumor
-0.4
187
Tumor
-0.4
461
Tumor
-0.5
467
Tumor
-0.5
823
Tumor
-0.5
715
Tumor
-0.5
211
Tumor
-0.5
343
Tumor
-0.5
113
Tumor
-0.5
917
Tumor
-0.5
383
Tumor
-0.6
311
Tumor
-0.6
395
Tumor
-0.6
877
Tumor
-0.6
661
Tumor
-0.6
473
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
